Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes IFFO1
  • Mouse genes Iffo1
  • Rat genes Iffo1
  • Zfish genes iffo1a,iffo1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Iffo1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	IFFO1	IPI	UniProtKB:Q13426	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	IFFO1	IPI	UniProtKB:P02545	Human	PMID:31548606
Molecular Function	GO:0005515	protein binding	IFFO1	IPI	UniProtKB:P02545-2	Human	PMID:31548606
Molecular Function	GO:0005515	protein binding	IFFO1	IPI	UniProtKB:Q13426	Human	PMID:31548606
Cellular Component	GO:0016363	nuclear matrix	IFFO1	IDA		Human	PMID:31548606
Cellular Component	GO:0005654	nucleoplasm	IFFO1	IDA		Human	PMID:31548606
Cellular Component	GO:0035861	site of double-strand break	IFFO1	IDA		Human	PMID:31548606
Biological Process	GO:1990683	DNA double-strand break attachment to nuclear envelope	IFFO1	IDA		Human	PMID:31548606
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	IFFO1	IMP		Human	PMID:31548606
Biological Process	GO:1990166	protein localization to site of double-strand break	IFFO1	IMP		Human	PMID:31548606

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern