Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes KDM1B
  • Mouse genes Kdm1b
  • Rat genes Kdm1b
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Kdm1b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0071949	FAD binding	KDM1B	IDA		Human	PMID:23260659
Molecular Function	GO:0071949	FAD binding	KDM1B	IDA		Human	PMID:23266887
Molecular Function	GO:0140682	FAD-dependent H3K4me/H3K4me3 demethylase activity	KDM1B	IDA		Human	PMID:23260659
Molecular Function	GO:0140682	FAD-dependent H3K4me/H3K4me3 demethylase activity	KDM1B	IDA		Human	PMID:23266887
Molecular Function	GO:0140682	FAD-dependent H3K4me/H3K4me3 demethylase activity	KDM1B	IDA		Human	PMID:23357850
Molecular Function	GO:0140682	FAD-dependent H3K4me/H3K4me3 demethylase activity	Kdm1b	IDA		Mouse	PMID:19407342
Molecular Function	GO:0140682	FAD-dependent H3K4me/H3K4me3 demethylase activity	Kdm1b	IDA		Mouse	PMID:19727073
Molecular Function	GO:0050660	flavin adenine dinucleotide binding	Kdm1b	IDA		Mouse	PMID:19407342
Molecular Function	GO:0042393	histone binding	KDM1B	IDA		Human	PMID:23260659
Molecular Function	GO:0032453	histone H3K4 demethylase activity	Kdm1b	IDA		Mouse	MGI:MGI:4352982|PMID:19407342
Molecular Function	GO:0032453	histone H3K4 demethylase activity	Kdm1b	IDA		Mouse	MGI:MGI:4358629|PMID:19727073
Molecular Function	GO:0005515	protein binding	KDM1B	IPI	UniProtKB:Q49A26	Human	PMID:23260659
Molecular Function	GO:0005515	protein binding	Kdm1b	IPI	UniProtKB:Q99PU7	Mouse	PMID:22878500
Molecular Function	GO:0008270	zinc ion binding	KDM1B	IDA		Human	PMID:23260659
Molecular Function	GO:0008270	zinc ion binding	KDM1B	IDA		Human	PMID:23266887
Molecular Function	GO:0008270	zinc ion binding	Kdm1b	IDA		Mouse	PMID:19407342
Cellular Component	GO:0005654	nucleoplasm	KDM1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000786	nucleosome	KDM1B	IDA		Human	PMID:23260659
Cellular Component	GO:0005634	nucleus	Kdm1b	IDA		Mouse	PMID:19727073
Biological Process	GO:0043046	DNA methylation involved in gamete generation	Kdm1b	IMP	MGI:MGI:4359289	Mouse	PMID:19727073
Biological Process	GO:0006349	regulation of gene expression by genomic imprinting	Kdm1b	IMP	MGI:MGI:4359289	Mouse	PMID:19727073

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern