Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM11
  • Mouse genes Lsm11
  • Rat genes Lsm11
  • Zfish genes lsm11
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm11

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LSM11	IPI	UniProtKB:P14678	Human	PMID:12975319
Molecular Function	GO:0005515	protein binding	LSM11	IPI	UniProtKB:Q16637	Human	PMID:12975319
Molecular Function	GO:0005515	protein binding	LSM11	IPI	UniProtKB:Q969L4	Human	PMID:12975319
Molecular Function	GO:0005515	protein binding	LSM11	IPI	UniProtKB:Q8WTR7	Human	PMID:16714279
Molecular Function	GO:0005515	protein binding	LSM11	IPI	UniProtKB:A4D1S5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Lsm11	IPI	UniProtKB:O14744|UniProtKB:P54105|UniProtKB:Q16637|UniProtKB:Q9BQA1	Mouse	MGI:MGI:4419078|PMID:16087681
Molecular Function	GO:0071209	U7 snRNA binding	LSM11	IDA		Human	PMID:12975319
Molecular Function	GO:0071209	U7 snRNA binding	LSM11	IPI	RNAcentral:URS000039C168_9606	Human	PMID:18082603
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	Lsm11	IDA		Mouse	MGI:MGI:4353869|PMID:19470752
Cellular Component	GO:0016604	nuclear body	LSM11	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	LSM11	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	LSM11	IDA		Human	PMID:12975319
Cellular Component	GO:0005697	telomerase holoenzyme complex	LSM11	IDA		Human	PMID:18082603
Cellular Component	GO:0005683	U7 snRNP	LSM11	IDA		Human	PMID:11574479
Cellular Component	GO:0005683	U7 snRNP	Lsm11	IDA		Mouse	MGI:MGI:2676509|PMID:12975319
Biological Process	GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	LSM11	IMP		Human	PMID:33230297
Biological Process	GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	Lsm11	IDA		Mouse	MGI:MGI:2676509|PMID:12975319
Biological Process	GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	LSM11	IMP		Human	PMID:16914750
Biological Process	GO:1902275	regulation of chromatin organization	LSM11	IMP		Human	PMID:33230297

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern