Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM2
  • Mouse genes Lsm2
  • Rat genes Lsm2
  • Zfish genes smx5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O95777	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62304	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62316	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9H9D4	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9UK45	Human	PMID:14667819
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O15116	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O95777	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62304	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62316	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9H9D4	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9UK45	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O15116	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O95777	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62312	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9UK45	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O95777	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P54105	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62312	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62316	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9UK45	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:A1A4E9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P43360	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P50222	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P54105	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q04864	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q08117	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q8N9N5	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q8TBB1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9BYV2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:27107012
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62304	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62312	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:29997244
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:31467278
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:O15116	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P14678-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P43357	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P43360	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P47929	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P54105	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62312	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q3MHD2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q86TB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q86X45	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9HC52	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9UK45	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:Q9Y250	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM2	IPI	UniProtKB:P62310	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Lsm2	IPI	PR:P54265	Mouse	PMID:8851885
Molecular Function	GO:0019901	protein kinase binding	Lsm2	IDA		Mouse	PMID:8851885
Molecular Function	GO:0003723	RNA binding	LSM2	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	LSM2	HDA		Human	PMID:22681889
Molecular Function	GO:0031267	small GTPase binding	LSM2	IPI	UniProtKB:P11233	Human	PMID:24056301
Cellular Component	GO:0071013	catalytic step 2 spliceosome	LSM2	IDA		Human	PMID:11991638
Cellular Component	GO:0005737	cytoplasm	LSM2	IDA		Human	PMID:12515382
Cellular Component	GO:0120115	Lsm2-8 complex	LSM2	IDA		Human	PMID:10523320
Cellular Component	GO:0005654	nucleoplasm	LSM2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	LSM2	IDA		Human	PMID:10523320
Cellular Component	GO:0005634	nucleus	LSM2	IDA		Human	PMID:26912367
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	LSM2	IDA		Human	PMID:28781166
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM2	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM2	IDA		Human	PMID:10523320
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM2	IDA		Human	PMID:26912367
Biological Process	GO:0006402	mRNA catabolic process	LSM2	IDA		Human	PMID:12515382
Biological Process	GO:0000398	mRNA splicing, via spliceosome	LSM2	IDA		Human	PMID:28781166
Biological Process	GO:0000244	spliceosomal tri-snRNP complex assembly	LSM2	IDA		Human	PMID:10523320

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern