Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM4
  • Mouse genes Lsm4
  • Rat genes Lsm4
  • Zfish genes lsm4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042731	PH domain binding	LSM4	IDA		Human	PMID:15905169
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O15116	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O95777	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q9UK45	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:P35521	Human	PMID:15905169
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q13137	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O15116	Human	PMID:19628699
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q86TB9	Human	PMID:20584987
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q6Y7W6	Human	PMID:20696395
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q9UK45	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q9UK45	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O15116	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O43586	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q13137	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q13422	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q96DT7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q96JM7	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O43586	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:O60861-1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q13137	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q96B26	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM4	IPI	UniProtKB:Q9UK45	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	LSM4	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	LSM4	HDA		Human	PMID:22681889
Cellular Component	GO:0005829	cytosol	LSM4	IDA		Human	PMID:15905169
Cellular Component	GO:0120115	Lsm2-8 complex	LSM4	IDA		Human	PMID:10523320
Cellular Component	GO:0016020	membrane	LSM4	IDA		Human	PMID:15905169
Cellular Component	GO:0043005	neuron projection	Lsm4	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:0005634	nucleus	LSM4	IDA		Human	PMID:26912367
Cellular Component	GO:0005634	nucleus	Lsm4	IDA		Rat	PMID:19188494|RGD:9999194
Cellular Component	GO:0032991	protein-containing complex	LSM4	IDA		Human	PMID:15905169
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	LSM4	IDA		Human	PMID:28781166
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM4	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM4	IDA		Human	PMID:26912367
Biological Process	GO:0000398	mRNA splicing, via spliceosome	LSM4	IDA		Human	PMID:28781166

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern