Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LSM5
  • Mouse genes Lsm5
  • Rat genes Lsm5
  • Zfish genes lsm5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lsm5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62304	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62306	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62310	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62312	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9UK45	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62306	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62312	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9UK45	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62306	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62312	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9UK45	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9UK45	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:O95988	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62304	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62306	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62310	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62312	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:P62380	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q6ZNM6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q96D03	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9H4B4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LSM5	IPI	UniProtKB:Q9UK45	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Lsm5	IPI	PR:Q9CQQ8	Mouse	PMID:11591653
Molecular Function	GO:0046982	protein heterodimerization activity	LSM5	IDA		Human	PMID:12515382
Cellular Component	GO:0005737	cytoplasm	LSM5	IDA		Human	PMID:12515382
Cellular Component	GO:0120115	Lsm2-8 complex	LSM5	IDA		Human	PMID:10523320
Cellular Component	GO:0005634	nucleus	LSM5	IDA		Human	PMID:26912367
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	LSM5	IDA		Human	PMID:28781166
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM5	IPI		Human	PMID:30975767
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	LSM5	IDA		Human	PMID:26912367
Biological Process	GO:0006402	mRNA catabolic process	LSM5	IDA		Human	PMID:12515382
Biological Process	GO:0000398	mRNA splicing, via spliceosome	LSM5	IDA		Human	PMID:28781166
Biological Process	GO:0009617	response to bacterium	Lsm5	IEP		Mouse	PMID:23012479

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern