Comparative GO Graph (mouse, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes
  • Mouse genes Msx3
  • Rat genes Msx3
  • Zfish genes msx1b,msx3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Msx3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035035	histone acetyltransferase binding	Msx3	IPI	MGI:MGI:1276116	Mouse	PMID:11115394
Molecular Function	GO:0035035	histone acetyltransferase binding	Msx3	IPI	PR:P45481	Mouse	PMID:11115394
Molecular Function	GO:0035035	histone acetyltransferase binding	Msx3	IPI	PR:O09106	Mouse	PMID:11115394
Molecular Function	GO:0035034	histone acetyltransferase regulator activity	Msx3	IDA		Mouse	PMID:11115394
Molecular Function	GO:0005515	protein binding	Msx3	IPI	PR:O89090	Mouse	PMID:1909605
Cellular Component	GO:0005634	nucleus	Msx3	IDA		Mouse	PMID:11115394
Biological Process	GO:0009953	dorsal/ventral pattern formation	msx1b	IDA		Zfish	PMID:16631154
Biological Process	GO:0048703	embryonic viscerocranium morphogenesis	msx1b	IGI	ZFIN:ZDB-MRPHLNO-100802-1	Zfish	PMID:20622853
Biological Process	GO:0031101	fin regeneration	msx1b	IMP	ZFIN:ZDB-MRPHLNO-060222-3	Zfish	PMID:20089153
Biological Process	GO:0031101	fin regeneration	msx1b	IMP	ZFIN:ZDB-MRPHLNO-060222-3	Zfish	PMID:16273523
Biological Process	GO:0031101	fin regeneration	msx1b	IMP	ZFIN:ZDB-MRPHLNO-060222-4,ZFIN:ZDB-MRPHLNO-060223-1	Zfish	PMID:16273523
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Msx3	IGI	MGI:MGI:1276116	Mouse	PMID:11115394
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Msx3	IGI	MGI:MGI:1098280	Mouse	PMID:11115394
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Msx3	IGI	MGI:MGI:98372	Mouse	PMID:15663180
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Msx3	IDA		Mouse	PMID:15663180
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Msx3	IDA		Mouse	PMID:11115394
Biological Process	GO:0043049	otic placode formation	msx1b	IGI	ZFIN:ZDB-MRPHLNO-070215-2,ZFIN:ZDB-MRPHLNO-070215-3	Zfish	PMID:16631154
Biological Process	GO:0043049	otic placode formation	msx3	IGI	ZFIN:ZDB-MRPHLNO-070215-1,ZFIN:ZDB-MRPHLNO-070215-2	Zfish	PMID:16631154
Biological Process	GO:0043523	regulation of neuron apoptotic process	msx1b	IGI	ZFIN:ZDB-MRPHLNO-100802-1	Zfish	PMID:20622853
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Msx3	IDA		Mouse	PMID:15663180

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern