Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NDC1
  • Mouse genes Ndc1
  • Rat genes Ndc1
  • Zfish genes ndc1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ndc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0017056	structural constituent of nuclear pore	NDC1	IMP		Human	PMID:16600873
Cellular Component	GO:0015629	actin cytoskeleton	NDC1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005737	cytoplasm	Ndc1	IDA		Mouse	PMID:24045954
Cellular Component	GO:0016020	membrane	NDC1	HDA		Human	PMID:19946888
Cellular Component	GO:0005635	nuclear envelope	NDC1	IDA		Human	PMID:24315095
Cellular Component	GO:0031965	nuclear membrane	NDC1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005643	nuclear pore	NDC1	IDA		Human	PMID:16600873
Cellular Component	GO:0005643	nuclear pore	Ndc1	IDA		Mouse	PMID:24045954
Cellular Component	GO:0005886	plasma membrane	NDC1	IDA		Human	GO_REF:0000052
Biological Process	GO:0007129	homologous chromosome pairing at meiosis	Ndc1	IMP	MGI:MGI:1856630	Mouse	PMID:24045954
Biological Process	GO:0051292	nuclear pore complex assembly	NDC1	IMP		Human	PMID:16600873
Biological Process	GO:0051664	nuclear pore localization	NDC1	IMP		Human	PMID:16600873
Biological Process	GO:0007283	spermatogenesis	Ndc1	IMP	MGI:MGI:1856630	Mouse	PMID:24045954

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern