Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NDN
  • Mouse genes Ndn
  • Rat genes Ndn
  • Zfish genes ndnl2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ndn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Ndn	IDA		Mouse	PMID:24349431
Molecular Function	GO:0043015	gamma-tubulin binding	Ndn	IDA		Mouse	PMID:15649943
Molecular Function	GO:1990841	promoter-specific chromatin binding	Ndn	IDA		Mouse	PMID:22514318
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:Q9Y6B2	Human	PMID:21364888
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:P07196	Human	PMID:24722188
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:Q9Y6B2	Human	PMID:24722188
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:Q96A49	Human	PMID:32529326
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:Q9BPZ3	Human	PMID:32529326
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:Q9Y6B2	Human	PMID:32529326
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:I6L9F6	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:P04792	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:P07196	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:P28799	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NDN	IPI	UniProtKB:P42858	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ndn	IPI	UniProtKB:P08138|UniProtKB:Q61501	Mouse	MGI:MGI:3027170|PMID:14593116
Molecular Function	GO:0005515	protein binding	Ndn	IPI	UniProtKB:P13297|UniProtKB:Q03358|UniProtKB:Q9QYH6	Mouse	MGI:MGI:3828407|PMID:15272023
Molecular Function	GO:0005515	protein binding	Ndn	IPI	UniProtKB:Q9Y6B2	Mouse	MGI:MGI:3813780|PMID:18557765
Molecular Function	GO:0005515	protein binding	Ndn	IPI	UniProtKB:Q61501	Mouse	MGI:MGI:3691954|PMID:17108174
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q8R0K9	Mouse	PMID:12198120
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q8K0X8	Mouse	PMID:15649943
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q9R1E0	Mouse	PMID:22514318
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q6TYB5	Mouse	PMID:15649943
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q9Z0W1	Mouse	PMID:16049186
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q3UFB7	Mouse	PMID:16049186
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q8R4T1	Mouse	PMID:24349431
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q61501	Mouse	PMID:12198120
Molecular Function	GO:0005515	protein binding	Ndn	IPI	PR:Q923E4	Mouse	PMID:22514318
Molecular Function	GO:0005515	protein binding	Ndn	IPI	RGD:3177	Rat	PMID:12414813|RGD:729117
Molecular Function	GO:0005515	protein binding	Ndn	IPI	RGD:620989	Rat	PMID:19386232|RGD:2314926
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Ndn	IDA		Mouse	PMID:24349431
Cellular Component	GO:0042995	cell projection	Ndn	IDA		Mouse	PMID:10965153
Cellular Component	GO:0005813	centrosome	Ndn	IDA		Mouse	PMID:15649943
Cellular Component	GO:0005737	cytoplasm	Ndn	IDA		Mouse	PMID:14593116
Cellular Component	GO:0005737	cytoplasm	Ndn	IDA		Mouse	PMID:24349431
Cellular Component	GO:0005737	cytoplasm	Ndn	IDA		Mouse	PMID:10965153
Cellular Component	GO:0005737	cytoplasm	Ndn	IDA		Rat	PMID:12414813|RGD:729117
Cellular Component	GO:0005829	cytosol	NDN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	Ndn	IDA		Mouse	PMID:10965153
Cellular Component	GO:0005829	cytosol	Ndn	IDA		Mouse	PMID:22514318
Cellular Component	GO:0005654	nucleoplasm	NDN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Ndn	IDA		Mouse	PMID:14593116
Cellular Component	GO:0005634	nucleus	Ndn	IDA		Mouse	PMID:22514318
Cellular Component	GO:0005634	nucleus	Ndn	IDA		Mouse	PMID:24349431
Cellular Component	GO:0032991	protein-containing complex	Ndn	IDA		Mouse	PMID:22514318
Biological Process	GO:0048675	axon extension	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15972963
Biological Process	GO:0007413	axonal fasciculation	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15972963
Biological Process	GO:0007409	axonogenesis	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15972963
Biological Process	GO:0007409	axonogenesis	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15649943
Biological Process	GO:0007417	central nervous system development	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15649943
Biological Process	GO:0071514	genomic imprinting	Ndn	IMP	MGI:MGI:2653045	Mouse	PMID:10508517
Biological Process	GO:0071514	genomic imprinting	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:10508517
Biological Process	GO:0008347	glial cell migration	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15972963
Biological Process	GO:0048871	multicellular organismal-level homeostasis	Ndn	IMP	MGI:MGI:2653045	Mouse	PMID:10508517
Biological Process	GO:0048871	multicellular organismal-level homeostasis	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:10508517
Biological Process	GO:0043433	negative regulation of DNA-binding transcription factor activity	Ndn	IDA		Mouse	PMID:12198120
Biological Process	GO:0043433	negative regulation of DNA-binding transcription factor activity	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:22514318
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:22514318
Biological Process	GO:0048666	neuron development	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:16049186
Biological Process	GO:0030182	neuron differentiation	Ndn	IDA		Mouse	PMID:12198120
Biological Process	GO:0001764	neuron migration	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:15972963
Biological Process	GO:0048011	neurotrophin TRK receptor signaling pathway	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:16049186
Biological Process	GO:0090312	positive regulation of protein deacetylation	Ndn	IDA		Mouse	PMID:22514318
Biological Process	GO:0090312	positive regulation of protein deacetylation	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:22514318
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ndn	IDA		Mouse	PMID:24349431
Biological Process	GO:0009791	post-embryonic development	Ndn	IMP	MGI:MGI:2653045	Mouse	PMID:10508517
Biological Process	GO:0009791	post-embryonic development	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:10508517
Biological Process	GO:0006355	regulation of DNA-templated transcription	Ndn	IGI	MGI:MGI:101941	Mouse	PMID:14593116
Biological Process	GO:0007585	respiratory gaseous exchange by respiratory system	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:12629158
Biological Process	GO:0003016	respiratory system process	Ndn	IMP	MGI:MGI:2653045	Mouse	PMID:10508517
Biological Process	GO:0003016	respiratory system process	Ndn	IMP	MGI:MGI:2653048	Mouse	PMID:10508517
Biological Process	GO:0019233	sensory perception of pain	Ndn	IMP	MGI:MGI:3586988	Mouse	PMID:16049186

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern