Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NID1
  • Mouse genes Nid1
  • Rat genes Nid1
  • Zfish genes nid1a,nid1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nid1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005518	collagen binding	NID1	IDA		Human	PMID:22952693
Molecular Function	GO:0005518	collagen binding	Nid1	IDA		Mouse	PMID:17517882
Molecular Function	GO:0050840	extracellular matrix binding	Nid1	IDA		Mouse	PMID:18757743
Molecular Function	GO:0043236	laminin binding	NID1	IDA		Human	PMID:22952693
Molecular Function	GO:0043237	laminin-1 binding	Nid1	IDA		Mouse	PMID:17517882
Molecular Function	GO:0005515	protein binding	Nid1	IPI	UniProtKB:P02468	Mouse	MGI:MGI:5556372|PMID:23948589
Molecular Function	GO:0005515	protein binding	Nid1	IPI	UniProtKB:P02468	Mouse	MGI:MGI:6094546|PMID:12931195
Molecular Function	GO:0005515	protein binding	Nid1	IPI	PR:P19137	Mouse	PMID:8995276
Molecular Function	GO:0005515	protein binding	Nid1	IPI	PR:Q61092	Mouse	PMID:11733994
Molecular Function	GO:0005515	protein binding	Nid1	IPI	UniProtKB:Q91ZV7	Rat	PMID:16574105|RGD:8554764
Molecular Function	GO:0043394	proteoglycan binding	NID1	IPI	UniProtKB:Q05793	Human	PMID:22952693
Cellular Component	GO:0005604	basement membrane	NID1	IDA		Human	PMID:22952693
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:15895400
Cellular Component	GO:0005604	basement membrane	Nid1	IPI	UniProtKB:P02462	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:7670489
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:17596926
Cellular Component	GO:0005604	basement membrane	Nid1	IPI	UniProtKB:P08572	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:18757743
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:14566019
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:16330543
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:12051813
Cellular Component	GO:0005604	basement membrane	Nid1	IPI	PR:P02468	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:12588956
Cellular Component	GO:0005604	basement membrane	Nid1	IDA		Mouse	PMID:10639489
Cellular Component	GO:0005604	basement membrane	Nid1	IPI	PR:P37889	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid1	IPI	PR:Q05793	Mouse	PMID:12243745
Cellular Component	GO:0071944	cell periphery	Nid1	IDA		Mouse	PMID:19295126
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:20551380
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:27068509
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:27559042
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:25037231
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID1	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Nid1	HDA		Mouse	MGI:MGI:5582867|PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Nid1	HDA		Mouse	MGI:MGI:6201834|PMID:22159717
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Nid1	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0070062	extracellular exosome	NID1	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	NID1	HDA		Human	PMID:23533145
Cellular Component	GO:0031012	extracellular matrix	Nid1	IDA		Mouse	PMID:16618944
Biological Process	GO:0007160	cell-matrix adhesion	Nid1	IDA		Mouse	PMID:12243745
Biological Process	GO:0030198	extracellular matrix organization	Nid1	IDA		Mouse	PMID:18757743
Biological Process	GO:0032836	glomerular basement membrane development	Nid1	IMP	MGI:MGI:2682959	Mouse	PMID:14566019
Biological Process	GO:0010811	positive regulation of cell-substrate adhesion	Nid1	IDA		Mouse	PMID:18757743

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern