Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NID2
  • Mouse genes Nid2
  • Rat genes Nid2
  • Zfish genes nid2a,nid2b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nid2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NID2	IPI	UniProtKB:Q5TAT6	Human	PMID:11956183
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:Q9WVJ9	Mouse	MGI:MGI:3709425|PMID:17324935
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:P08572	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	PR:P02468	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:P05106	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:P02462	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	PR:Q05793	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:P08648	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	PR:P37889	Mouse	PMID:12243745
Molecular Function	GO:0005515	protein binding	Nid2	IPI	UniProtKB:Q91ZV7	Rat	PMID:16574105|RGD:8554764
Cellular Component	GO:0005604	basement membrane	NID2	IDA		Human	PMID:22952693
Cellular Component	GO:0005604	basement membrane	Nid2	IPI	UniProtKB:P08572	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid2	IPI	PR:P37889	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid2	IDA		Mouse	PMID:15895400
Cellular Component	GO:0005604	basement membrane	Nid2	IPI	PR:Q05793	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid2	IPI	UniProtKB:P02462	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid2	IPI	PR:P02468	Mouse	PMID:12243745
Cellular Component	GO:0005604	basement membrane	Nid2	IDA		Mouse	PMID:18757743
Cellular Component	GO:0009986	cell surface	Nid2	IDA		Rat	PMID:16574105|RGD:8554764
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:20551380
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:27068509
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:27559042
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:28327460
Cellular Component	GO:0062023	collagen-containing extracellular matrix	NID2	HDA		Human	PMID:28675934
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Nid2	HDA		Mouse	MGI:MGI:5582867|PMID:23658023
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Nid2	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0070062	extracellular exosome	NID2	HDA		Human	PMID:23533145
Cellular Component	GO:0031012	extracellular matrix	Nid2	IDA		Mouse	PMID:16618944
Cellular Component	GO:0005886	plasma membrane	NID2	IDA		Human	GO_REF:0000052
Biological Process	GO:0007160	cell-matrix adhesion	Nid2	IPI	UniProtKB:P05106	Mouse	PMID:12243745
Biological Process	GO:0007160	cell-matrix adhesion	Nid2	IPI	UniProtKB:P08648	Mouse	PMID:12243745
Biological Process	GO:0007160	cell-matrix adhesion	Nid2	IDA		Mouse	PMID:12243745
Biological Process	GO:0061386	closure of optic fissure	nid2a	IMP	ZFIN:ZDB-GENO-200625-2	Zfish	PMID:31034836
Biological Process	GO:0031101	fin regeneration	nid2a	IMP	ZFIN:ZDB-GENO-190104-3	Zfish	PMID:28871129

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern