Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NOBOX
  • Mouse genes Nobox
  • Rat genes Nobox
  • Zfish genes nobox
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nobox

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Nobox	IDA		Mouse	MGI:MGI:5572873|PMID:16997917
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Nobox	IDA		Mouse	PMID:20659469
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Nobox	IMP	MGI:MGI:3053093	Mouse	PMID:17494914
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Nobox	IDA		Mouse	MGI:MGI:5572873|PMID:16997917
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Nobox	IDA		Mouse	PMID:17494914
Molecular Function	GO:0043565	sequence-specific DNA binding	NOBOX	IDA		Human	PMID:27798098
Molecular Function	GO:0043565	sequence-specific DNA binding	Nobox	IDA		Mouse	PMID:20659469
Cellular Component	GO:0005737	cytoplasm	Nobox	IDA		Mouse	PMID:19480014
Biological Process	GO:0001541	ovarian follicle development	Nobox	IMP	MGI:MGI:3053093	Mouse	PMID:17641088
Biological Process	GO:0001541	ovarian follicle development	Nobox	IMP	MGI:MGI:3053093	Mouse	PMID:15326356
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Nobox	IDA		Mouse	MGI:MGI:5572873|PMID:16997917
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Nobox	IMP	MGI:MGI:3053093	Mouse	PMID:17494914
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	NOBOX	IDA		Human	PMID:27798098
Biological Process	GO:0006366	transcription by RNA polymerase II	Nobox	IMP	MGI:MGI:3053093	Mouse	PMID:17494914

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern