Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NOCT
  • Mouse genes Noct
  • Rat genes Noct
  • Zfish genes nocta,noctb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Noct

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Noct	IDA		Mouse	MGI:MGI:4837993|PMID:20685873
Molecular Function	GO:0019178	NADP phosphatase activity	NOCT	IDA		Human	PMID:31147539
Molecular Function	GO:0102757	NADPH phosphatase activity	NOCT	IDA		Human	PMID:31147539
Molecular Function	GO:0004535	poly(A)-specific ribonuclease activity	Noct	IMP		Mouse	MGI:MGI:5308514|PMID:22073225
Molecular Function	GO:0004535	poly(A)-specific ribonuclease activity	Noct	IDA		Mouse	MGI:MGI:5567912|PMID:17400819
Molecular Function	GO:0005515	protein binding	Noct	IPI	UniProtKB:P37238	Mouse	MGI:MGI:4457955|PMID:20498072
Molecular Function	GO:0005515	protein binding	Noct	IPI	PR:Q640Q5	Mouse	PMID:18625844
Molecular Function	GO:0005515	protein binding	Noct	IPI	PR:Q60809	Mouse	PMID:18625844
Cellular Component	GO:0005737	cytoplasm	Noct	IDA		Mouse	MGI:MGI:5494762|PMID:23449310
Cellular Component	GO:0005737	cytoplasm	Noct	IDA		Mouse	MGI:MGI:4457955|PMID:20498072
Cellular Component	GO:0005739	mitochondrion	NOCT	IDA		Human	PMID:31147539
Cellular Component	GO:0005634	nucleus	Noct	IDA		Mouse	MGI:MGI:5494762|PMID:23449310
Cellular Component	GO:0000932	P-body	Noct	IDA		Mouse	PMID:18625844
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Noct	IDA		Mouse	MGI:MGI:4457955|PMID:20498072
Biological Process	GO:0032922	circadian regulation of gene expression	Noct	IMP		Mouse	MGI:MGI:4837993|PMID:20685873
Biological Process	GO:0007623	circadian rhythm	Noct	IEP		Mouse	MGI:MGI:5308514|PMID:22073225
Biological Process	GO:0007623	circadian rhythm	Noct	IEP		Mouse	MGI:MGI:4837993|PMID:20685873
Biological Process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	Noct	IGI	MGI:MGI:1298230	Mouse	PMID:18625844
Biological Process	GO:0048255	mRNA stabilization	Noct	IMP		Mouse	MGI:MGI:5308514|PMID:22073225
Biological Process	GO:0006739	NADP metabolic process	NOCT	IDA		Human	PMID:31147539
Biological Process	GO:0010629	negative regulation of gene expression	Noct	IMP		Mouse	MGI:MGI:4837993|PMID:20685873
Biological Process	GO:0045668	negative regulation of osteoblast differentiation	Noct	IMP		Mouse	MGI:MGI:4457955|PMID:20498072
Biological Process	GO:0033962	P-body assembly	Noct	IGI	MGI:MGI:1298230	Mouse	PMID:18625844
Biological Process	GO:0045600	positive regulation of fat cell differentiation	Noct	IMP		Mouse	MGI:MGI:4457955|PMID:20498072
Biological Process	GO:0042752	regulation of circadian rhythm	Noct	IMP		Mouse	MGI:MGI:5308514|PMID:22073225
Biological Process	GO:0045995	regulation of embryonic development	Noct	IMP		Mouse	MGI:MGI:5494762|PMID:23449310
Biological Process	GO:0009991	response to extracellular stimulus	Noct	IDA		Mouse	MGI:MGI:5567912|PMID:17400819
Biological Process	GO:0032496	response to lipopolysaccharide	Noct	IDA		Mouse	MGI:MGI:5308514|PMID:22073225

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern