Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NPAT
  • Mouse genes Npat
  • Rat genes Npat
  • Zfish genes npat
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Npat

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NPAT	IPI	UniProtKB:Q9BQA5	Human	PMID:15988025
Molecular Function	GO:0005515	protein binding	NPAT	IPI	UniProtKB:Q9BQA5	Human	PMID:18850719
Molecular Function	GO:0005515	protein binding	NPAT	IPI	UniProtKB:P49918	Human	PMID:19170105
Molecular Function	GO:0003713	transcription coactivator activity	NPAT	IDA		Human	PMID:14585971
Molecular Function	GO:0003713	transcription coactivator activity	NPAT	IMP		Human	PMID:15988025
Molecular Function	GO:0003713	transcription coactivator activity	NPAT	IMP		Human	PMID:17163457
Molecular Function	GO:0003713	transcription coactivator activity	NPAT	IDA		Human	PMID:17974976
Molecular Function	GO:0003714	transcription corepressor activity	NPAT	IMP		Human	PMID:17163457
Cellular Component	GO:0015030	Cajal body	NPAT	IDA		Human	PMID:15988025
Cellular Component	GO:0015030	Cajal body	NPAT	IDA		Human	PMID:17068332
Cellular Component	GO:0015030	Cajal body	NPAT	IDA		Human	PMID:17577209
Cellular Component	GO:0015030	Cajal body	NPAT	IDA		Human	PMID:19170105
Cellular Component	GO:0005737	cytoplasm	NPAT	IDA		Human	PMID:17068332
Cellular Component	GO:0097504	Gemini of coiled bodies	NPAT	IDA		Human	PMID:17068332
Cellular Component	GO:0005654	nucleoplasm	NPAT	IDA		Human	PMID:17068332
Cellular Component	GO:0005634	nucleus	NPAT	IDA		Human	PMID:15988025
Cellular Component	GO:0005634	nucleus	NPAT	IDA		Human	PMID:19170105
Biological Process	GO:0001701	in utero embryonic development	Npat	IMP	MGI:MGI:5636907	Mouse	PMID:27996060
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	NPAT	IDA		Human	PMID:18850719
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	NPAT	IDA		Human	PMID:18850719
Biological Process	GO:0010468	regulation of gene expression	NPAT	IMP		Human	PMID:15988025
Biological Process	GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle	NPAT	IMP		Human	PMID:15988025

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern