Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NUP54
  • Mouse genes Nup54
  • Rat genes Nup54
  • Zfish genes nup54
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nup54

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	Nup54	IPI	RGD:619926	Rat	PMID:22036567|RGD:9831194
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q67020	Human	PMID:21994455
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O14964	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P19012	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q8IY31	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q96CS2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:26496610
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:27194810
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NV70	Human	PMID:31413325
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O14964	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P19012	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:A5D8V6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O00303	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O14964	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O43482	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O75935-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O95229	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O95994	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P06753	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P37198	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P61970	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P63010-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q10567-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q14525	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q5JUK2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q5JVL4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q7Z3Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q86YM7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q8IY31-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q8IYI6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q8NI38	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q8TD31-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q969V4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q96KN3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BT25	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BT92	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BXU0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9H3R5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9H7B4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NP55	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NV70	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NWQ9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NX04	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NYK6-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9NZD8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9UJW9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9UJX2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9Y6A5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:O14901	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P06307	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P30519	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:P62826	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NUP54	IPI	UniProtKB:Q9BVL2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Nup54	IPI	RGD:737037	Rat	PMID:11266456|RGD:9831195
Molecular Function	GO:0005515	protein binding	Nup54	IPI	RGD:619938	Rat	PMID:22036567|RGD:9831194
Molecular Function	GO:0005515	protein binding	Nup54	IPI	RGD:631334	Rat	PMID:22036567|RGD:9831194
Molecular Function	GO:0005515	protein binding	Nup54	IPI	RGD:631334	Rat	PMID:26046439|RGD:10401147
Molecular Function	GO:0005515	protein binding	Nup54	IPI	RGD:1345837	Rat	PMID:8707840|RGD:633404
Molecular Function	GO:0005515	protein binding	Nup54	IPI	UniProtKB:P52296	Rat	PMID:8707840|RGD:633404
Molecular Function	GO:0005515	protein binding	Nup54	IPI	UniProtKB:P61972	Rat	PMID:8707840|RGD:633404
Molecular Function	GO:0044877	protein-containing complex binding	Nup54	IDA		Rat	PMID:22036567|RGD:9831194
Molecular Function	GO:0044877	protein-containing complex binding	Nup54	IPI	RGD:619938	Rat	PMID:22036567|RGD:9831194
Molecular Function	GO:0044877	protein-containing complex binding	Nup54	IPI	RGD:631334,RGD:619938	Rat	PMID:24574455|RGD:10401148
Molecular Function	GO:0044877	protein-containing complex binding	Nup54	IDA		Rat	PMID:26046439|RGD:10401147
Molecular Function	GO:0017056	structural constituent of nuclear pore	Nup54	IPI	UniProtKB:P17955	Rat	PMID:8589458|RGD:8553994
Molecular Function	GO:0017056	structural constituent of nuclear pore	Nup54	IDA		Rat	PMID:8707840|RGD:633404
Cellular Component	GO:0005635	nuclear envelope	NUP54	IDA		Human	PMID:24315095
Cellular Component	GO:0005635	nuclear envelope	Nup54	IDA		Rat	PMID:8707840|RGD:633404
Cellular Component	GO:0005643	nuclear pore	Nup54	IDA		Rat	PMID:8589458|RGD:8553994
Cellular Component	GO:0005643	nuclear pore	Nup54	IDA		Rat	PMID:8707840|RGD:633404
Cellular Component	GO:0032991	protein-containing complex	Nup54	IDA		Rat	PMID:26046439|RGD:10401147
Biological Process	GO:0048565	digestive tract development	nup54	IMP	ZFIN:ZDB-MRPHLNO-150601-3	Zfish	PMID:25605329
Biological Process	GO:0009953	dorsal/ventral pattern formation	nup54	IMP	ZFIN:ZDB-MRPHLNO-150601-3	Zfish	PMID:25605329
Biological Process	GO:0031017	exocrine pancreas development	nup54	IMP	ZFIN:ZDB-MRPHLNO-150601-3	Zfish	PMID:25605329
Biological Process	GO:0007507	heart development	nup54	IMP	ZFIN:ZDB-MRPHLNO-150601-3	Zfish	PMID:25605329
Biological Process	GO:0001889	liver development	nup54	IMP	ZFIN:ZDB-MRPHLNO-150601-3	Zfish	PMID:25605329
Biological Process	GO:0006913	nucleocytoplasmic transport	Nup54	IDA		Rat	PMID:8707840|RGD:633404
Biological Process	GO:0006605	protein targeting	Nup54	IDA		Rat	PMID:8707840|RGD:633404
Biological Process	GO:0042306	regulation of protein import into nucleus	Nup54	IDA		Rat	PMID:8707840|RGD:633404

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern