Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NUP88
  • Mouse genes Nup88
  • Rat genes Nup88
  • Zfish genes nup88
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nup88

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NUP88	IPI	UniProtKB:P37198	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	NUP88	IPI	UniProtKB:P35658|UniProtKB:P37198|UniProtKB:P52948	Human	PMID:30543681
Molecular Function	GO:0005515	protein binding	NUP88	IPI	UniProtKB:P37198	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NUP88	IPI	UniProtKB:Q9UBB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Nup88	IPI	RGD:1304977	Rat	PMID:9166401|RGD:633582
Cellular Component	GO:0005635	nuclear envelope	NUP88	IDA		Human	PMID:24315095
Cellular Component	GO:0005643	nuclear pore	NUP88	IDA		Human	PMID:23777819
Cellular Component	GO:0005643	nuclear pore	NUP88	IDA		Human	PMID:30543681
Cellular Component	GO:0005643	nuclear pore	Nup88	IDA		Rat	PMID:9166401|RGD:633582
Cellular Component	GO:0005654	nucleoplasm	NUP88	IDA		Human	GO_REF:0000052
Biological Process	GO:0000278	mitotic cell cycle	Nup88	IDA		Rat	PMID:10362555|RGD:10401210

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern