Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NUP98
  • Mouse genes Nup98
  • Rat genes Nup98
  • Zfish genes nup98
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nup98

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	NUP98	IMP		Human	PMID:28221134
Molecular Function	GO:0008139	nuclear localization sequence binding	Nup98	IDA		Rat	PMID:7878057|RGD:729014
Molecular Function	GO:0042277	peptide binding	Nup98	IDA		Rat	PMID:7736573|RGD:70632
Molecular Function	GO:1990841	promoter-specific chromatin binding	NUP98	IMP		Human	PMID:28221134
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P55735	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q8NFH3	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q8WUM0	Human	PMID:15146057
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P78406	Human	PMID:17172455
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P78406	Human	PMID:18832153
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q93009	Human	PMID:19615732
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P78406	Human	PMID:20498086
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q08211	Human	PMID:28221134
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q99567	Human	PMID:30543681
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:32353859
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:33060197
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P59634	Human	PMID:33060197
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:33097660
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P59634	Human	PMID:33097660
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P78406	Human	PMID:33097660
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:33765414
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P59634	Human	PMID:33765414
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:33849972
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P59634	Human	PMID:33849972
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q93009	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P0DTC6	Human	PMID:35096974
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P59634	Human	PMID:35096974
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:P78406	Human	PMID:35096974
Molecular Function	GO:0005515	protein binding	NUP98	IPI	UniProtKB:Q92621	Human	PMID:9348540
Molecular Function	GO:0005515	protein binding	Nup98	IPI	RGD:2909	Rat	PMID:7604027|RGD:2316581
Molecular Function	GO:0017056	structural constituent of nuclear pore	NUP98	IMP		Human	PMID:15229283
Molecular Function	GO:0003713	transcription coactivator activity	NUP98	IMP		Human	PMID:28221134
Cellular Component	GO:0000776	kinetochore	NUP98	IDA		Human	PMID:15146057
Cellular Component	GO:0016604	nuclear body	NUP98	IDA		Human	PMID:28221134
Cellular Component	GO:0005635	nuclear envelope	NUP98	IDA		Human	PMID:15146057
Cellular Component	GO:0005635	nuclear envelope	NUP98	IDA		Human	PMID:28221134
Cellular Component	GO:0042405	nuclear inclusion body	NUP98	IDA		Human	PMID:11839768
Cellular Component	GO:0042405	nuclear inclusion body	Nup98	IDA		Rat	PMID:11839768|RGD:8553300
Cellular Component	GO:0031965	nuclear membrane	NUP98	IDA		Human	PMID:11839768
Cellular Component	GO:0031965	nuclear membrane	NUP98	IDA		Human	PMID:12802065
Cellular Component	GO:0031965	nuclear membrane	NUP98	IDA		Human	PMID:15229283
Cellular Component	GO:0031965	nuclear membrane	NUP98	IDA		Human	PMID:20407419
Cellular Component	GO:0031965	nuclear membrane	Nup98	IDA		Rat	PMID:11839768|RGD:8553300
Cellular Component	GO:0034399	nuclear periphery	NUP98	IDA		Human	PMID:11839768
Cellular Component	GO:0034399	nuclear periphery	NUP98	IDA		Human	PMID:15229283
Cellular Component	GO:0034399	nuclear periphery	Nup98	IDA		Rat	PMID:11839768|RGD:8553300
Cellular Component	GO:0005643	nuclear pore	NUP98	IDA		Human	PMID:12802065
Cellular Component	GO:0005643	nuclear pore	NUP98	IDA		Human	PMID:15229283
Cellular Component	GO:0005643	nuclear pore	NUP98	IDA		Human	PMID:9348540
Cellular Component	GO:0005643	nuclear pore	Nup98	IDA		Rat	PMID:7736573|RGD:70632
Cellular Component	GO:0044615	nuclear pore nuclear basket	NUP98	IDA		Human	PMID:11839768
Cellular Component	GO:0044615	nuclear pore nuclear basket	Nup98	IDA		Rat	PMID:11839768|RGD:8553300
Cellular Component	GO:0031080	nuclear pore outer ring	NUP98	IDA		Human	PMID:17360435
Cellular Component	GO:0005654	nucleoplasm	NUP98	IDA		Human	PMID:28221134
Cellular Component	GO:0005654	nucleoplasm	Nup98	IDA		Rat	PMID:7736573|RGD:70632
Cellular Component	GO:0005634	nucleus	Nup98	IDA		Mouse	PMID:15615787
Cellular Component	GO:1990904	ribonucleoprotein complex	NUP98	IMP		Human	PMID:28221134
Biological Process	GO:0048484	enteric nervous system development	nup98	IMP	ZFIN:ZDB-MRPHLNO-170419-21	Zfish	PMID:28274275
Biological Process	GO:0048484	enteric nervous system development	nup98	IMP	ZFIN:ZDB-CRISPR-170419-3	Zfish	PMID:28274275
Biological Process	GO:0048484	enteric nervous system development	nup98	IMP	ZFIN:ZDB-MRPHLNO-170419-12	Zfish	PMID:28274275
Biological Process	GO:0051292	nuclear pore complex assembly	NUP98	IMP		Human	PMID:15229283
Biological Process	GO:0048026	positive regulation of mRNA splicing, via spliceosome	NUP98	IMP		Human	PMID:28221134
Biological Process	GO:0006606	protein import into nucleus	Nup98	IMP		Rat	PMID:7736573|RGD:70632

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern