Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes OGFOD1
  • Mouse genes Ogfod1
  • Rat genes Ogfod1
  • Zfish genes ogfod1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ogfod1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031544	peptidyl-proline 3-dioxygenase activity	OGFOD1	IDA		Human	PMID:24550462
Molecular Function	GO:0031543	peptidyl-proline dioxygenase activity	OGFOD1	IDA		Human	PMID:24550447
Molecular Function	GO:0005515	protein binding	OGFOD1	IPI	UniProtKB:P62266	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	OGFOD1	IPI	UniProtKB:Q9BSK4	Human	PMID:32296183
Cellular Component	GO:0010494	cytoplasmic stress granule	OGFOD1	IMP		Human	PMID:24550447
Cellular Component	GO:0005829	cytosol	OGFOD1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	OGFOD1	IDA		Human	GO_REF:0000052
Biological Process	GO:0008283	cell population proliferation	OGFOD1	IMP		Human	PMID:24550447
Biological Process	GO:0019511	peptidyl-proline hydroxylation	OGFOD1	IDA		Human	PMID:24550447
Biological Process	GO:0018126	protein hydroxylation	OGFOD1	IDA		Human	PMID:24550447
Biological Process	GO:0018126	protein hydroxylation	OGFOD1	IDA		Human	PMID:24550462
Biological Process	GO:0006449	regulation of translational termination	OGFOD1	IMP		Human	PMID:24550447
Biological Process	GO:0034063	stress granule assembly	OGFOD1	IMP		Human	PMID:24550447

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern