Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes OPN1SW
  • Mouse genes Opn1sw
  • Rat genes Opn1sw
  • Zfish genes opn1sw1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Opn1sw

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	OPN1SW	IPI	UniProtKB:Q9GZY8-5	Human	PMID:32296183
Cellular Component	GO:0044297	cell body	Opn1sw	IDA		Rat	PMID:20209167|RGD:6893562
Cellular Component	GO:0120199	cone photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:10813773
Cellular Component	GO:0005829	cytosol	OPN1SW	IDA		Human	GO_REF:0000052
Cellular Component	GO:0045171	intercellular bridge	OPN1SW	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	OPN1SW	IDA		Human	GO_REF:0000052
Cellular Component	GO:0048471	perinuclear region of cytoplasm	OPN1SW	IDA		Human	PMID:30168605
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:23386608
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:26420485
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:10725384
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:12651948
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:19332056
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:22183407
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Mouse	PMID:23351594
Cellular Component	GO:0001750	photoreceptor outer segment	Opn1sw	IDA		Rat	PMID:20209167|RGD:6893562
Cellular Component	GO:0005886	plasma membrane	OPN1SW	IDA		Human	PMID:31380578
Cellular Component	GO:0005886	plasma membrane	OPN1SW	IDA		Human	PMID:31730232
Cellular Component	GO:0043195	terminal bouton	Opn1sw	IDA		Rat	PMID:20209167|RGD:6893562
Biological Process	GO:0071492	cellular response to UV-A	OPN1SW	IDA		Human	PMID:31380578

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern