Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes P3H4
  • Mouse genes P3h4
  • Rat genes P3h4
  • Zfish genes p3h4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set P3h4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	P3h4	IPI	UniProtKB:P24369|UniProtKB:Q8CG70|UniProtKB:Q9R0E2	Mouse	MGI:MGI:5779580|PMID:27119146
Cellular Component	GO:1902494	catalytic complex	P3h4	IMP		Mouse	MGI:MGI:5779580|PMID:27119146
Cellular Component	GO:0005783	endoplasmic reticulum	P3H4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	P3H4	IDA		Human	PMID:23959653
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	P3H4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000795	synaptonemal complex	P3h4	IDA		Rat	PMID:1363622|RGD:633987
Biological Process	GO:0046849	bone remodeling	P3h4	IMP		Mouse	MGI:MGI:5779580|PMID:27119146
Biological Process	GO:0046849	bone remodeling	P3h4	IMP		Mouse	MGI:MGI:5897747|PMID:23959653
Biological Process	GO:0032964	collagen biosynthetic process	P3h4	IMP		Mouse	MGI:MGI:5779580|PMID:27119146
Biological Process	GO:0030199	collagen fibril organization	P3h4	IMP		Mouse	MGI:MGI:5779580|PMID:27119146
Biological Process	GO:0017185	peptidyl-lysine hydroxylation	P3h4	IMP		Mouse	MGI:MGI:5779580|PMID:27119146

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern