Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PALLD
  • Mouse genes Palld
  • Rat genes Palld,Palldl1
  • Zfish genes palld
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Palld

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008092	cytoskeletal protein binding	Palld	IPI	RGD:1305848	Rat	PMID:23546604|RGD:11530027
Molecular Function	GO:0008092	cytoskeletal protein binding	Palld	IPI	RGD:71024	Rat	PMID:23546604|RGD:11530027
Molecular Function	GO:0005515	protein binding	PALLD	IPI	UniProtKB:P15311	Human	PMID:11598191
Molecular Function	GO:0005515	protein binding	PALLD	IPI	UniProtKB:O94875	Human	PMID:16125169
Cellular Component	GO:0015629	actin cytoskeleton	PALLD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005884	actin filament	PALLD	IDA		Human	PMID:11598191
Cellular Component	GO:0030424	axon	Palld	IDA		Rat	PMID:11438925|RGD:2325791
Cellular Component	GO:0030424	axon	Palld	IDA		Rat	PMID:11553711|RGD:14974248
Cellular Component	GO:0030424	axon	Palld	IDA		Rat	PMID:12932445|RGD:2325786
Cellular Component	GO:0044295	axonal growth cone	Palld	IDA		Rat	PMID:12932445|RGD:2325786
Cellular Component	GO:0005856	cytoskeleton	Palld	IDA		Mouse	MGI:MGI:6383613|PMID:10931874
Cellular Component	GO:0005856	cytoskeleton	Palld	IDA		Rat	PMID:16125169|RGD:15090834
Cellular Component	GO:0005856	cytoskeleton	Palld	IDA		Rat	PMID:16868024|RGD:2325783
Cellular Component	GO:0005829	cytosol	PALLD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0060076	excitatory synapse	Palld	IDA		Rat	PMID:11438925|RGD:2325791
Cellular Component	GO:0030175	filopodium	Palld	IDA		Rat	PMID:12932445|RGD:2325786
Cellular Component	GO:0005925	focal adhesion	PALLD	IDA		Human	PMID:17322171
Cellular Component	GO:0005925	focal adhesion	PALLD	HDA		Human	PMID:21423176
Cellular Component	GO:0005925	focal adhesion	Palld	IDA		Mouse	MGI:MGI:6383613|PMID:10931874
Cellular Component	GO:0030426	growth cone	Palld	IDA		Rat	PMID:11438925|RGD:2325791
Cellular Component	GO:0030426	growth cone	Palld	IDA		Rat	PMID:11553711|RGD:14974248
Cellular Component	GO:0030027	lamellipodium	PALLD	IDA		Human	PMID:17537434
Cellular Component	GO:0005739	mitochondrion	PALLD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0043025	neuronal cell body	Palld	IDA		Rat	PMID:12932445|RGD:2325786
Cellular Component	GO:0005634	nucleus	PALLD	IDA		Human	PMID:11598191
Cellular Component	GO:0005886	plasma membrane	PALLD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0002102	podosome	Palld	IDA		Rat	PMID:16868024|RGD:2325783
Cellular Component	GO:0001726	ruffle	Palld	IDA		Rat	PMID:16868024|RGD:2325783
Cellular Component	GO:0001725	stress fiber	PALLD	IDA		Human	PMID:11598191
Cellular Component	GO:0001725	stress fiber	Palld	IDA		Mouse	MGI:MGI:6383613|PMID:10931874
Cellular Component	GO:0001725	stress fiber	Palld	IMP		Rat	PMID:11553711|RGD:14974248
Cellular Component	GO:0001725	stress fiber	Palld	IDA		Rat	PMID:16125169|RGD:15090834
Cellular Component	GO:0001725	stress fiber	Palld	IDA		Rat	PMID:16868024|RGD:2325783
Cellular Component	GO:0001725	stress fiber	Palld	IDA		Rat	PMID:22659164|RGD:13432282
Cellular Component	GO:0030018	Z disc	PALLD	IDA		Human	PMID:16125169
Cellular Component	GO:0030018	Z disc	Palld	IDA		Mouse	MGI:MGI:6383613|PMID:10931874
Cellular Component	GO:0030018	Z disc	Palld	IDA		Rat	PMID:11553711|RGD:14974248
Cellular Component	GO:0030018	Z disc	Palld	IDA		Rat	PMID:16125169|RGD:15090834
Cellular Component	GO:0030018	Z disc	Palld	IDA		Rat	PMID:16868024|RGD:2325783
Biological Process	GO:0030036	actin cytoskeleton organization	Palld	IMP		Mouse	PMID:24012369
Biological Process	GO:0071456	cellular response to hypoxia	Palld	IEP		Rat	PMID:16481593|RGD:2325785
Biological Process	GO:0003382	epithelial cell morphogenesis	Palld	IMP		Mouse	PMID:24012369
Biological Process	GO:0003334	keratinocyte development	Palld	IMP		Mouse	PMID:24012369
Biological Process	GO:0031175	neuron projection development	Palld	IMP		Rat	PMID:12932445|RGD:2325786
Biological Process	GO:0071803	positive regulation of podosome assembly	Palld	IMP		Rat	PMID:16868024|RGD:2325783
Biological Process	GO:0031529	ruffle organization	Palld	IMP		Rat	PMID:16868024|RGD:2325783
Biological Process	GO:0060707	trophoblast giant cell differentiation	Palld	IEP		Rat	PMID:16481593|RGD:2325785
Biological Process	GO:0042060	wound healing	Palld	IEP		Rat	PMID:16794588|RGD:2325784

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern