Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PATZ1
  • Mouse genes Patz1
  • Rat genes Patz1
  • Zfish genes patz1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Patz1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Patz1	IDA		Mouse	PMID:16491076
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Patz1	IDA		Mouse	MGI:MGI:1889875|PMID:10669750
Molecular Function	GO:0005515	protein binding	Patz1	IPI	UniProtKB:Q6PDN3	Mouse	MGI:MGI:3688344|PMID:15102471
Molecular Function	GO:0005515	protein binding	Patz1	IPI	PR:Q60974	Mouse	PMID:16491076
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Patz1	IDA		Mouse	MGI:MGI:1889875|PMID:10669750
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Patz1	IDA		Mouse	PMID:16491076
Molecular Function	GO:0031625	ubiquitin protein ligase binding	PATZ1	IPI	UniProtKB:P78317	Human	PMID:10713105
Cellular Component	GO:0001673	male germ cell nucleus	Patz1	IDA		Mouse	PMID:18241078
Cellular Component	GO:0005654	nucleoplasm	PATZ1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Patz1	IDA		Mouse	PMID:18241078
Cellular Component	GO:0005634	nucleus	Patz1	IDA		Mouse	PMID:16491076
Biological Process	GO:0008584	male gonad development	Patz1	IMP	MGI:MGI:3795851	Mouse	PMID:18241078
Biological Process	GO:0010596	negative regulation of endothelial cell migration	Patz1	IMP		Mouse	MGI:MGI:5903662|PMID:27983982
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Patz1	IDA		Mouse	PMID:10669750
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Patz1	IDA		Mouse	MGI:MGI:1889875|PMID:10669750
Biological Process	GO:0006355	regulation of DNA-templated transcription	Patz1	IPI	PR:Q60974	Mouse	PMID:16491076
Biological Process	GO:0010468	regulation of gene expression	Patz1	IDA		Mouse	PMID:16491076
Biological Process	GO:0007283	spermatogenesis	Patz1	IMP	MGI:MGI:3795851	Mouse	PMID:18241078
Biological Process	GO:0030217	T cell differentiation	Patz1	IDA		Mouse	PMID:16491076

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern