Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PBRM1
  • Mouse genes Pbrm1
  • Rat genes Pbrm1
  • Zfish genes pbrm1,pbrm1l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pbrm1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Pbrm1	IDA		Mouse	PMID:15601824
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:P51532	Human	PMID:11780067
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:P51532	Human	PMID:12368262
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:P51532	Human	PMID:15985610
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:Q68CP9	Human	PMID:15985610
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:Q9P2D1	Human	PMID:20130577
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:P04608	Human	PMID:22140357
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:P51532	Human	PMID:22140357
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:O95696-1	Human	PMID:27142060
Molecular Function	GO:0005515	protein binding	PBRM1	IPI	UniProtKB:O95696-2	Human	PMID:27142060
Molecular Function	GO:0005515	protein binding	Pbrm1	IPI	UniProtKB:Q9D8M7	Mouse	MGI:MGI:3775125|PMID:17640523
Cellular Component	GO:0000776	kinetochore	Pbrm1	IDA		Mouse	PMID:14519686
Cellular Component	GO:0005654	nucleoplasm	PBRM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	PBRM1	IDA		Human	PMID:25593309
Cellular Component	GO:0016514	SWI/SNF complex	PBRM1	IDA		Human	PMID:8895581
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Pbrm1	IDA		Mouse	PMID:24335282
Biological Process	GO:0001825	blastocyst formation	Pbrm1	IMP		Mouse	PMID:27869233
Biological Process	GO:0007507	heart development	Pbrm1	IMP	MGI:MGI:3526660	Mouse	PMID:15601824
Biological Process	GO:0008285	negative regulation of cell population proliferation	PBRM1	IMP		Human	PMID:21248752
Biological Process	GO:0001890	placenta development	Pbrm1	IMP	MGI:MGI:3526660	Mouse	PMID:15601824
Biological Process	GO:0060999	positive regulation of dendritic spine development	Pbrm1	IMP		Rat	PMID:31723243|RGD:150340632

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern