Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDLIM1
  • Mouse genes Pdlim1
  • Rat genes Pdlim1
  • Zfish genes pdlim1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pdlim1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003779	actin binding	Pdlim1	IDA		Rat	PMID:22659164|RGD:13432282
Molecular Function	GO:0098641	cadherin binding involved in cell-cell adhesion	PDLIM1	HDA		Human	PMID:25468996
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:O43707	Human	PMID:10753915
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P12814	Human	PMID:10753915
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P35609	Human	PMID:10861853
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P12814	Human	PMID:11110697
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:O43707	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P14136	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:O43707	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:O43707	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P14136	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	PDLIM1	IPI	UniProtKB:P14136	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	Pdlim1	IPI	PR:P97474	Mouse	PMID:12464179
Molecular Function	GO:0005515	protein binding	Pdlim1	IPI	UniProtKB:P36202	Rat	PMID:22659164|RGD:13432282
Molecular Function	GO:0005515	protein binding	Pdlim1	IPI	UniProtKB:Q9Z1P2	Rat	PMID:22659164|RGD:13432282
Molecular Function	GO:0003713	transcription coactivator activity	Pdlim1	IDA		Mouse	PMID:12464179
Cellular Component	GO:0015629	actin cytoskeleton	Pdlim1	IDA		Rat	PMID:22659164|RGD:13432282
Cellular Component	GO:0005912	adherens junction	PDLIM1	HDA		Human	PMID:25468996
Cellular Component	GO:0005737	cytoplasm	PDLIM1	IDA		Human	PMID:10861853
Cellular Component	GO:0005737	cytoplasm	PDLIM1	IDA		Human	PMID:11110697
Cellular Component	GO:0005737	cytoplasm	Pdlim1	IDA		Rat	PMID:22659164|RGD:13432282
Cellular Component	GO:0005856	cytoskeleton	PDLIM1	IDA		Human	PMID:10861853
Cellular Component	GO:0005856	cytoskeleton	PDLIM1	IDA		Human	PMID:11110697
Cellular Component	GO:0005925	focal adhesion	PDLIM1	HDA		Human	PMID:21423176
Cellular Component	GO:0001725	stress fiber	PDLIM1	IDA		Human	PMID:11110697
Cellular Component	GO:0001725	stress fiber	Pdlim1	IDA		Rat	PMID:22659164|RGD:13432282
Cellular Component	GO:0005667	transcription regulator complex	Pdlim1	IDA		Mouse	PMID:12464179
Cellular Component	GO:0030018	Z disc	PDLIM1	IDA		Human	PMID:10861853
Cellular Component	GO:0030018	Z disc	Pdlim1	IDA		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0030036	actin cytoskeleton organization	Pdlim1	IMP		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0030950	establishment or maintenance of actin cytoskeleton polarity	Pdlim1	IMP		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0010761	fibroblast migration	Pdlim1	IMP		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0030011	maintenance of cell polarity	Pdlim1	IMP		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Pdlim1	IDA		Mouse	PMID:12464179
Biological Process	GO:0001666	response to hypoxia	Pdlim1	IEP		Rat	PMID:8522188|RGD:68225
Biological Process	GO:0043149	stress fiber assembly	Pdlim1	IMP		Rat	PMID:22659164|RGD:13432282

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern