Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDLIM4
  • Mouse genes Pdlim4
  • Rat genes Pdlim4
  • Zfish genes pdlim4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pdlim4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042805	actinin binding	Pdlim4	IPI	UniProtKB:P05094	Rat	PMID:14729062|RGD:1300470
Molecular Function	GO:0051393	alpha-actinin binding	PDLIM4	IPI	UniProtKB:P12814	Human	PMID:20120020
Molecular Function	GO:0051393	alpha-actinin binding	Pdlim4	IPI	UniProtKB:Q9Z1P2	Rat	PMID:14729062|RGD:1300470
Molecular Function	GO:0051393	alpha-actinin binding	Pdlim4	IPI	UniProtKB:D3ZCV0	Rat	PMID:15456832|RGD:13432260
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:Q15654	Human	PMID:10826496
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:P12931	Human	PMID:19307596
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:P15559	Human	PMID:21636573
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:O00560	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:P12814	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:P48728-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDLIM4	IPI	UniProtKB:Q8WU58	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Pdlim4	IPI	UniProtKB:Q9Z1Y4	Mouse	MGI:MGI:5509005|PMID:10826496
Molecular Function	GO:0005515	protein binding	Pdlim4	IPI	UniProtKB:Q64512	Mouse	MGI:MGI:5509005|PMID:10826496
Molecular Function	GO:0005515	protein binding	Pdlim4	IPI	UniProtKB:O70209	Mouse	MGI:MGI:6103273|PMID:15663004
Molecular Function	GO:0005515	protein binding	Pdlim4	IPI	UniProtKB:P19490	Rat	PMID:15456832|RGD:13432260
Molecular Function	GO:0005515	protein binding	Pdlim4	IPI	UniProtKB:P52944	Rat	PMID:22659164|RGD:13432282
Molecular Function	GO:0042803	protein homodimerization activity	PDLIM4	IDA		Human	PMID:25158098
Molecular Function	GO:0019903	protein phosphatase binding	PDLIM4	IPI	UniProtKB:Q12923	Human	PMID:19307596
Molecular Function	GO:0019903	protein phosphatase binding	Pdlim4	IPI	UniProtKB:Q64512	Mouse	MGI:MGI:6103273|PMID:15663004
Cellular Component	GO:0015629	actin cytoskeleton	Pdlim4	IPI	UniProtKB:Q9Z1P2	Rat	PMID:14729062|RGD:1300470
Cellular Component	GO:0015629	actin cytoskeleton	Pdlim4	IPI	UniProtKB:D3ZCV0	Rat	PMID:15456832|RGD:13432260
Cellular Component	GO:0005737	cytoplasm	PDLIM4	IDA		Human	PMID:21636573
Cellular Component	GO:0005856	cytoskeleton	PDLIM4	IDA		Human	PMID:21636573
Cellular Component	GO:0043197	dendritic spine	Pdlim4	IDA		Rat	PMID:15456832|RGD:13432260
Cellular Component	GO:0031905	early endosome lumen	Pdlim4	IDA		Rat	PMID:15456832|RGD:13432260
Cellular Component	GO:0031941	filamentous actin	PDLIM4	IDA		Human	PMID:10826496
Cellular Component	GO:0030027	lamellipodium	PDLIM4	IDA		Human	PMID:10826496
Cellular Component	GO:0005634	nucleus	PDLIM4	IDA		Human	PMID:10826496
Cellular Component	GO:0005634	nucleus	PDLIM4	IDA		Human	PMID:21636573
Cellular Component	GO:0048471	perinuclear region of cytoplasm	PDLIM4	IDA		Human	PMID:19307596
Cellular Component	GO:0045211	postsynaptic membrane	Pdlim4	IDA		Rat	PMID:15456832|RGD:13432260
Cellular Component	GO:0034777	recycling endosome lumen	Pdlim4	IDA		Rat	PMID:15456832|RGD:13432260
Cellular Component	GO:0001725	stress fiber	PDLIM4	IDA		Human	PMID:21636573
Cellular Component	GO:0001725	stress fiber	Pdlim4	IDA		Rat	PMID:14729062|RGD:1300470
Cellular Component	GO:0001725	stress fiber	Pdlim4	IDA		Rat	PMID:22659164|RGD:13432282
Biological Process	GO:0030036	actin cytoskeleton organization	Pdlim4	IDA		Rat	PMID:14729062|RGD:1300470
Biological Process	GO:0031532	actin cytoskeleton reorganization	PDLIM4	IDA		Human	PMID:21636573
Biological Process	GO:0098976	excitatory chemical synaptic transmission	Pdlim4	IDA		Rat	PMID:15456832|RGD:13432260
Biological Process	GO:0051496	positive regulation of stress fiber assembly	Pdlim4	IDA		Rat	PMID:14729062|RGD:1300470
Biological Process	GO:0051496	positive regulation of stress fiber assembly	Pdlim4	IMP		Rat	PMID:22659164|RGD:13432282

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern