Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PGM5
  • Mouse genes Pgm5
  • Rat genes Pgm5
  • Zfish genes pgm5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pgm5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Pgm5	IPI	PR:P11531	Mouse	PMID:7890770
Molecular Function	GO:0005515	protein binding	Pgm5	IPI	MGI:MGI:104631	Mouse	PMID:7890770
Cellular Component	GO:0005912	adherens junction	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0030055	cell-substrate junction	Pgm5	IDA		Mouse	PMID:7890770
Cellular Component	GO:0043034	costamere	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0009898	cytoplasmic side of plasma membrane	PGM5	IDA		Human	PMID:10867799
Cellular Component	GO:0016010	dystrophin-associated glycoprotein complex	Pgm5	IDA		Mouse	PMID:7890770
Cellular Component	GO:0005925	focal adhesion	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0014704	intercalated disc	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0042383	sarcolemma	PGM5	IDA		Human	PMID:10867799
Cellular Component	GO:0042383	sarcolemma	Pgm5	IDA		Mouse	PMID:7890770
Cellular Component	GO:0005914	spot adherens junction	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0001725	stress fiber	PGM5	IDA		Human	PMID:8175905
Cellular Component	GO:0030018	Z disc	Pgm5	IDA		Mouse	PMID:7890770
Biological Process	GO:0030239	myofibril assembly	pgm5	IMP	ZFIN:ZDB-MRPHLNO-141106-1	Zfish	PMID:24963132
Biological Process	GO:0014706	striated muscle tissue development	pgm5	IMP	ZFIN:ZDB-MRPHLNO-141106-1	Zfish	PMID:24963132

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern