Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PHF5A
  • Mouse genes Phf5a
  • Rat genes Phf5a
  • Zfish genes phf5a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Phf5a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:Q15428	Human	PMID:17332742
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:Q15428	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:O75533	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:Q15393	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:Q9BWJ5	Human	PMID:27720643
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:G5E9A7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:O60333-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:P60891	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PHF5A	IPI	UniProtKB:Q7Z699	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Phf5a	IPI	UniProtKB:A2AQ19|UniProtKB:Q5XJE5|UniProtKB:Q62018|UniProtKB:Q8K2T8	Mouse	MGI:MGI:6203683|PMID:27749823
Molecular Function	GO:0005515	protein binding	Phf5a	IPI	UniProtKB:Q8JZM7|UniProtKB:Q9ERF3	Mouse	MGI:MGI:6203683|PMID:27749823
Molecular Function	GO:0005515	protein binding	Phf5a	IPI	UniProtKB:O35326|UniProtKB:Q8CHI8|UniProtKB:Q91VR5|UniProtKB:Q9D883	Mouse	MGI:MGI:4839441|PMID:18758164
Molecular Function	GO:0003723	RNA binding	PHF5A	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	PHF5A	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	PHF5A	IDA		Human	PMID:27720643
Molecular Function	GO:0008270	zinc ion binding	PHF5A	IDA		Human	PMID:28541300
Cellular Component	GO:0016363	nuclear matrix	Phf5a	IDA		Mouse	PMID:12054543
Cellular Component	GO:0016607	nuclear speck	Phf5a	IDA		Mouse	MGI:MGI:4839441|PMID:18758164
Cellular Component	GO:0005654	nucleoplasm	PHF5A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	PHF5A	IDA		Human	PMID:27720643
Cellular Component	GO:0005634	nucleus	PHF5A	IDA		Human	PMID:28541300
Cellular Component	GO:0005634	nucleus	PHF5A	IDA		Human	PMID:29360106
Cellular Component	GO:0005634	nucleus	Phf5a	IDA		Mouse	MGI:MGI:6203683|PMID:27749823
Cellular Component	GO:0005689	U12-type spliceosomal complex	PHF5A	IDA		Human	PMID:15146077
Cellular Component	GO:0005686	U2 snRNP	PHF5A	IDA		Human	PMID:12234937
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	PHF5A	IDA		Human	PMID:29360106
Cellular Component	GO:0005684	U2-type spliceosomal complex	PHF5A	IPI		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PHF5A	IDA		Human	PMID:12234937
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PHF5A	IDA		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PHF5A	IDA		Human	PMID:29360106
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Phf5a	IDA		Rat	PMID:12810571|RGD:633219
Biological Process	GO:0048863	stem cell differentiation	Phf5a	IEP		Mouse	MGI:MGI:6203683|PMID:27749823

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern