Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes POLL
  • Mouse genes Poll
  • Rat genes Poll
  • Zfish genes poll
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Poll

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051575	5'-deoxyribose-5-phosphate lyase activity	POLL	IDA		Human	PMID:19806195
Molecular Function	GO:0003887	DNA-directed DNA polymerase activity	POLL	IDA		Human	PMID:19806195
Molecular Function	GO:0003887	DNA-directed DNA polymerase activity	Poll	IDA		Mouse	PMID:10966791
Molecular Function	GO:0005515	protein binding	POLL	IPI	UniProtKB:Q13426	Human	PMID:30250067
Molecular Function	GO:0005515	protein binding	POLL	IPI	UniProtKB:Q9BUH6	Human	PMID:30250067
Molecular Function	GO:0005515	protein binding	POLL	IPI	UniProtKB:Q9H9Q4	Human	PMID:30250067
Cellular Component	GO:0005654	nucleoplasm	POLL	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035861	site of double-strand break	POLL	IDA		Human	PMID:30250067
Biological Process	GO:0006287	base-excision repair, gap-filling	POLL	IDA		Human	PMID:19806195
Biological Process	GO:0071897	DNA biosynthetic process	POLL	IDA		Human	PMID:19806195
Biological Process	GO:0000724	double-strand break repair via homologous recombination	POLL	IMP		Human	PMID:20693240
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	POLL	IMP		Human	PMID:19806195
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	POLL	IDA		Human	PMID:30250067
Biological Process	GO:0006289	nucleotide-excision repair	POLL	IDA		Human	PMID:10982892

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern