Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PREP
  • Mouse genes Prep
  • Rat genes Prep
  • Zfish genes prep
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Prep

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004175	endopeptidase activity	Prep	IDA		Rat	PMID:11792464|RGD:633649
Molecular Function	GO:0004175	endopeptidase activity	Prep	IDA		Rat	PMID:17415460|RGD:1626457
Molecular Function	GO:0042277	peptide binding	Prep	IDA		Rat	PMID:17415460|RGD:1626457
Molecular Function	GO:0005515	protein binding	PREP	IPI	UniProtKB:P04406	Human	PMID:23348613
Cellular Component	GO:0005737	cytoplasm	Prep	IDA		Mouse	PMID:9538240
Cellular Component	GO:0005829	cytosol	PREP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	Prep	IDA		Rat	PMID:11792464|RGD:633649
Cellular Component	GO:0016020	membrane	PREP	HDA		Human	PMID:19946888
Cellular Component	GO:0005634	nucleus	Prep	IDA		Mouse	PMID:9538240
Biological Process	GO:0030163	protein catabolic process	Prep	IDA		Rat	PMID:11792464|RGD:633649
Biological Process	GO:0030163	protein catabolic process	Prep	IDA		Rat	PMID:17415460|RGD:1626457

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern