Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PRPF38A
  • Mouse genes Prpf38a
  • Rat genes Prpf38a
  • Zfish genes prpf38a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Prpf38a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:P78362	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q96SB4	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q6NYC1	Human	PMID:23455924
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:P78362	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q96SB4	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:O00560	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:P49760	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:P78362	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q9H190	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q9H190	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q16629	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q92997	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q96CW1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q9H190	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:P78362	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	PRPF38A	IPI	UniProtKB:Q96SB4	Human	PMID:32707033
Molecular Function	GO:0003723	RNA binding	PRPF38A	HDA		Human	PMID:22681889
Cellular Component	GO:0005654	nucleoplasm	PRPF38A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	PRPF38A	IDA		Human	PMID:28781166
Cellular Component	GO:0071011	precatalytic spliceosome	PRPF38A	IDA		Human	PMID:26673105
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	PRPF38A	IDA		Human	PMID:28781166
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PRPF38A	IMP		Human	PMID:26673105
Biological Process	GO:0000398	mRNA splicing, via spliceosome	PRPF38A	IDA		Human	PMID:28781166

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern