Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ATP5MF-PTCD1,PTCD1
  • Mouse genes Ptcd1
  • Rat genes Ptcd1
  • Zfish genes ptcd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ptcd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:P08247	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:P57678	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:Q5JR59-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:Q8NI38	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:Q9BWT7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:Q9UBB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PTCD1	IPI	UniProtKB:Q9Y680	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	PTCD1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	PTCD1	HDA		Human	PMID:22681889
Molecular Function	GO:0000049	tRNA binding	PTCD1	IDA		Human	PMID:19651879
Cellular Component	GO:0005759	mitochondrial matrix	Ptcd1	IDA		Rat	PMID:19651879|RGD:8553492
Cellular Component	GO:0005739	mitochondrion	PTCD1	IDA		Human	PMID:19651879
Biological Process	GO:0032543	mitochondrial translation	Ptcd1	IMP		Mouse	MGI:MGI:6278405|PMID:29617655
Biological Process	GO:0042780	tRNA 3'-end processing	PTCD1	IDA		Human	PMID:21857155

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern