Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PTPN4
  • Mouse genes Ptpn4
  • Rat genes Ptpn4
  • Zfish genes ptpn4a,ptpn4b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ptpn4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035254	glutamate receptor binding	Ptpn4	IPI	PR:P35436	Mouse	PMID:33158444
Molecular Function	GO:0035254	glutamate receptor binding	Ptpn4	IPI	PR:Q01097	Mouse	PMID:33158444
Molecular Function	GO:0004726	non-membrane spanning protein tyrosine phosphatase activity	Ptpn4	IDA		Mouse	PMID:11054567
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:Q92993	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P16333	Human	PMID:17474147
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P46108	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P53778	Human	PMID:25158884
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:O75400-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P06307	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PTPN4	IPI	UniProtKB:P55212	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ptpn4	IPI	UniProtKB:P24161	Mouse	MGI:MGI:3806743|PMID:18614237
Cellular Component	GO:0005737	cytoplasm	PTPN4	IDA		Human	PMID:10940933
Cellular Component	GO:0009898	cytoplasmic side of plasma membrane	PTPN4	IDA		Human	PMID:10940933
Cellular Component	GO:0016020	membrane	Ptpn4	IDA		Mouse	PMID:33158444
Biological Process	GO:0018108	peptidyl-tyrosine phosphorylation	Ptpn4	IDA		Mouse	PMID:33158444

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern