Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Ptpra

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes PTPRA
- Mouse genes Ptpra
- Rat genes Ptpra
- Zfish genes ptpra
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ptpra

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P00523	Human	PMID:10698938
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P12931	Human	PMID:10698938
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P00523	Human	PMID:11923305
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P12931	Human	PMID:11923305
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:11923305
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:19380743
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:22801373
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:24189400
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P00533	Human	PMID:28065597
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:28065597
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:28330616
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P00533	Human	PMID:31980649
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:31980649
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P62993	Human	PMID:7518772
Molecular Function	GO:0005515	protein binding	PTPRA	IPI	UniProtKB:P39688	Human	PMID:9535845
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P68403	Mouse	MGI:MGI:72812\|PMID:7537734
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P70232	Mouse	MGI:MGI:3771533\|PMID:18046458
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:Q60631	Mouse	MGI:MGI:5553227\|PMID:23452850
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P05480\|UniProtKB:Q60631	Mouse	MGI:MGI:5508322\|PMID:7518772
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:Q60631	Mouse	MGI:MGI:5442237\|PMID:22801373
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P12931	Mouse	MGI:MGI:5508572\|PMID:20158519
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:Q60673	Mouse	MGI:MGI:5508281\|PMID:12364328
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P00523	Mouse	MGI:MGI:5512963\|PMID:12834342
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	RGD:62080	Rat	PMID:18211905\|RGD:2313426
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	UniProtKB:P28648	Rat	PMID:18211905\|RGD:2313426
Molecular Function	GO:0005515	protein binding	Ptpra	IPI	RGD:732473	Rat	PMID:7518443\|RGD:2314656
Molecular Function	GO:0004725	protein tyrosine phosphatase activity	Ptpra	IMP		Mouse	MGI:MGI:5442237\|PMID:22801373
Molecular Function	GO:0004725	protein tyrosine phosphatase activity	Ptpra	IDA		Rat	PMID:19812040\|RGD:2314625
Molecular Function	GO:0044877	protein-containing complex binding	Ptpra	IDA		Rat	PMID:12065411\|RGD:2314651
Cellular Component	GO:0070062	extracellular exosome	PTPRA	HDA		Human	PMID:20458337
Cellular Component	GO:0005925	focal adhesion	Ptpra	IMP		Mouse	MGI:MGI:5442237\|PMID:22801373
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	Ptpra	IDA		Rat	PMID:10692429\|RGD:1642747
Cellular Component	GO:0016020	membrane	Ptpra	IMP		Mouse	MGI:MGI:5442237\|PMID:22801373
Cellular Component	GO:0005886	plasma membrane	Ptpra	IDA		Rat	PMID:12065411\|RGD:2314651
Cellular Component	GO:0005886	plasma membrane	Ptpra	IDA		Rat	PMID:9683640\|RGD:2314653
Cellular Component	GO:0043235	receptor complex	PTPRA	IDA		Human	PMID:23382219
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Ptpra	IDA		Mouse	PMID:12912911
Cellular Component	GO:0098685	Schaffer collateral - CA1 synapse	Ptpra	IMP		Mouse	PMID:12912911
Cellular Component	GO:0097060	synaptic membrane	Ptpra	IDA		Mouse	PMID:16899073
Cellular Component	GO:0097060	synaptic membrane	Ptpra	IEP		Mouse	PMID:16899073
Biological Process	GO:0060027	convergent extension involved in gastrulation	ptpra	IMP	ZFIN:ZDB-MRPHLNO-100614-1	Zfish	PMID:20188722
Biological Process	GO:0060027	convergent extension involved in gastrulation	ptpra	IMP	ZFIN:ZDB-GENO-100728-2	Zfish	PMID:20188722
Biological Process	GO:0060027	convergent extension involved in gastrulation	ptpra	IGI	ZFIN:ZDB-MRPHLNO-041217-10,ZFIN:ZDB-MRPHLNO-100614-1	Zfish	PMID:20188722
Biological Process	GO:0008286	insulin receptor signaling pathway	Ptpra	IMP	MGI:MGI:2445612	Mouse	PMID:14733908
Biological Process	GO:0007229	integrin-mediated signaling pathway	Ptpra	IMP		Mouse	MGI:MGI:5442237\|PMID:22801373
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Ptpra	IDA		Mouse	PMID:12912911
Biological Process	GO:0050804	modulation of chemical synaptic transmission	Ptpra	IMP		Mouse	PMID:12912911
Biological Process	GO:0048709	oligodendrocyte differentiation	Ptpra	IEP		Rat	PMID:19812040\|RGD:2314625
Biological Process	GO:0048714	positive regulation of oligodendrocyte differentiation	Ptpra	IMP		Rat	PMID:19812040\|RGD:2314625
Biological Process	GO:0006468	protein phosphorylation	Ptpra	IDA		Mouse	PMID:14733908
Biological Process	GO:0051893	regulation of focal adhesion assembly	Ptpra	IMP		Mouse	MGI:MGI:5442237\|PMID:22801373
Biological Process	GO:0045859	regulation of protein kinase activity	ptpra	IDA		Zfish	PMID:12086467
Biological Process	GO:0060041	retina development in camera-type eye	ptpra	IMP	ZFIN:ZDB-MRPHLNO-100714-2	Zfish	PMID:11836793

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.