Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PYM1
  • Mouse genes Pym1
  • Rat genes Pym1
  • Zfish genes pym1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pym1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:16209946
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:18026120
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q9Y5S9	Human	PMID:18026120
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:18066079
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q9Y5S9	Human	PMID:19410547
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:19478851
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q2HR75	Human	PMID:20436455
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q9NUX5	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:23084401
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:B2R9Y1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:P61326	Human	PMID:25616068
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q68842	Human	PMID:25616068
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q99IB8:PRO_0000045592	Human	PMID:25616068
Molecular Function	GO:0005515	protein binding	PYM1	IPI	UniProtKB:Q8WWV3	Human	PMID:32296183
Molecular Function	GO:0043022	ribosome binding	PYM1	IDA		Human	PMID:18026120
Molecular Function	GO:0043022	ribosome binding	PYM1	IDA		Human	PMID:19410547
Molecular Function	GO:0003723	RNA binding	PYM1	HDA		Human	PMID:22681889
Cellular Component	GO:0030054	cell junction	PYM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	PYM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035145	exon-exon junction complex	PYM1	IDA		Human	PMID:18026120
Cellular Component	GO:0005730	nucleolus	PYM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	PYM1	IDA		Human	GO_REF:0000052
Biological Process	GO:1903259	exon-exon junction complex disassembly	PYM1	IDA		Human	PMID:19410547
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	PYM1	IDA		Human	PMID:19410547
Biological Process	GO:0045727	positive regulation of translation	PYM1	IDA		Human	PMID:18026120

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern