Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB38
  • Mouse genes Rab38
  • Rat genes Rab38
  • Zfish genes rab38a,rab38b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab38

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035650	AP-1 adaptor complex binding	RAB38	IPI	UniProtKB:O43747	Human	PMID:22511774
Molecular Function	GO:0035651	AP-3 adaptor complex binding	RAB38	IPI	UniProtKB:Q9Y2T2	Human	PMID:22511774
Molecular Function	GO:0036461	BLOC-2 complex binding	RAB38	IPI	UniProtKB:Q86YV9	Human	PMID:22511774
Molecular Function	GO:0005525	GTP binding	Rab38	IDA		Rat	PMID:15843158|RGD:1599671
Molecular Function	GO:0030742	GTP-dependent protein binding	RAB38	IPI	UniProtKB:O00203	Human	PMID:22511774
Molecular Function	GO:0030742	GTP-dependent protein binding	RAB38	IPI	UniProtKB:O43747	Human	PMID:22511774
Molecular Function	GO:0030742	GTP-dependent protein binding	RAB38	IPI	UniProtKB:Q86YV9	Human	PMID:22511774
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:O43747	Human	PMID:22511774
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:Q86YV9	Human	PMID:22511774
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:Q9Y2T2	Human	PMID:22511774
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:Q5S007	Human	PMID:31552791
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:O14656-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:P01023	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:P19404	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:P50570-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:P51608	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:Q16637	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RAB38	IPI	UniProtKB:Q8WXH2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Rab38	IPI	UniProtKB:Q3UMR0	Mouse	MGI:MGI:3797438|PMID:18477474
Cellular Component	GO:0044297	cell body	Rab38	IDA		Rat	PMID:17043139|RGD:152025192
Cellular Component	GO:0005737	cytoplasm	Rab38	IDA		Rat	PMID:11337364|RGD:633808
Cellular Component	GO:0031410	cytoplasmic vesicle	Rab38	IDA		Rat	PMID:17043139|RGD:152025192
Cellular Component	GO:0005829	cytosol	Rab38	IDA		Rat	PMID:15843158|RGD:1599671
Cellular Component	GO:0005769	early endosome	RAB38	IDA		Human	PMID:22511774
Cellular Component	GO:0005783	endoplasmic reticulum	Rab38	IDA		Rat	PMID:15843158|RGD:1599671
Cellular Component	GO:0005794	Golgi apparatus	Rab38	IDA		Rat	PMID:15843158|RGD:1599671
Cellular Component	GO:0005764	lysosome	RAB38	IDA		Human	PMID:25767741
Cellular Component	GO:0042470	melanosome	RAB38	IDA		Human	PMID:22511774
Cellular Component	GO:0042470	melanosome	Rab38	IDA		Mouse	MGI:MGI:5755324|PMID:26620560
Cellular Component	GO:0042470	melanosome	Rab38	IDA		Rat	PMID:17043139|RGD:152025192
Cellular Component	GO:0033162	melanosome membrane	RAB38	IDA		Human	PMID:23084991
Cellular Component	GO:0016020	membrane	RAB38	IDA		Human	PMID:22511774
Cellular Component	GO:0044233	mitochondria-associated endoplasmic reticulum membrane	RAB38	IDA		Human	PMID:25767741
Cellular Component	GO:0005739	mitochondrion	RAB38	IDA		Human	PMID:25767741
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Rab38	IDA		Rat	PMID:17043139|RGD:152025192
Cellular Component	GO:0045335	phagocytic vesicle	RAB38	IDA		Human	PMID:21255211
Cellular Component	GO:0031982	vesicle	Rab38	IDA		Rat	PMID:11337364|RGD:633808
Biological Process	GO:0035646	endosome to melanosome transport	RAB38	IMP		Human	PMID:22511774
Biological Process	GO:1903232	melanosome assembly	RAB38	IMP		Human	PMID:22511774
Biological Process	GO:1903232	melanosome assembly	RAB38	IDA		Human	PMID:23084991
Biological Process	GO:0007005	mitochondrion organization	RAB38	IMP		Human	PMID:25767741
Biological Process	GO:0090383	phagosome acidification	RAB38	IMP		Human	PMID:21255211
Biological Process	GO:0060155	platelet dense granule organization	Rab38	IMP		Rat	PMID:18983523|RGD:2324691
Biological Process	GO:0048023	positive regulation of melanin biosynthetic process	Rab38	IMP		Rat	PMID:17043139|RGD:152025192
Biological Process	GO:2001247	positive regulation of phosphatidylcholine biosynthetic process	Rab38	IDA		Rat	PMID:28438206|RGD:13524861
Biological Process	GO:1904377	positive regulation of protein localization to cell periphery	Rab38	IMP		Rat	PMID:17043139|RGD:152025192
Biological Process	GO:0072657	protein localization to membrane	RAB38	IMP		Human	PMID:22511774
Biological Process	GO:0072657	protein localization to membrane	RAB38	IMP		Human	PMID:25767741

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern