Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RARA
  • Mouse genes Rara
  • Rat genes Rara
  • Zfish genes raraa,rarab
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rara

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051393	alpha-actinin binding	RARA	IPI	UniProtKB:O43707	Human	PMID:22351778
Molecular Function	GO:0003682	chromatin binding	RARA	IDA		Human	PMID:20080953
Molecular Function	GO:0031490	chromatin DNA binding	RARA	IDA		Human	PMID:19917671
Molecular Function	GO:0003677	DNA binding	Rara	IDA		Mouse	PMID:14980219
Molecular Function	GO:0003677	DNA binding	Rara	IDA		Mouse	PMID:15528198
Molecular Function	GO:0003700	DNA-binding transcription factor activity	RARA	IDA		Human	PMID:18922886
Molecular Function	GO:0003700	DNA-binding transcription factor activity	RARA	IDA		Human	PMID:20413580
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Rara	IDA		Mouse	PMID:8152920
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Rara	IDA		Mouse	PMID:15528198
Molecular Function	GO:0001217	DNA-binding transcription repressor activity	RARA	IMP		Human	PMID:28122350
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	rarab	IDA		Zfish	PMID:31091225
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	rarab	IMP		Zfish	PMID:31091225
Molecular Function	GO:0019899	enzyme binding	RARA	IPI	UniProtKB:P55345	Human	PMID:12039952
Molecular Function	GO:0019899	enzyme binding	RARA	IPI	UniProtKB:O88491	Human	PMID:9628876
Molecular Function	GO:1901363	heterocyclic compound binding	Rara	IDA		Rat	PMID:19100254|RGD:2314252
Molecular Function	GO:0042826	histone deacetylase binding	Rara	IPI	RGD:619976	Rat	PMID:21383775|RGD:9590238
Molecular Function	GO:0048027	mRNA 5'-UTR binding	Rara	IDA		Rat	PMID:19073915|RGD:2314253
Molecular Function	GO:0000900	mRNA regulatory element binding translation repressor activity	Rara	IDA		Rat	PMID:19073915|RGD:2314253
Molecular Function	GO:0004879	nuclear receptor activity	RARA	IDA		Human	PMID:21131358
Molecular Function	GO:0004879	nuclear receptor activity	RARA	IDA		Human	PMID:2825025
Molecular Function	GO:0004879	nuclear receptor activity	Rara	IDA		Mouse	PMID:15528198
Molecular Function	GO:0004879	nuclear receptor activity	Rara	IDA		Mouse	PMID:15322135
Molecular Function	GO:0004879	nuclear receptor activity	raraa	IDA		Zfish	PMID:18929555|ZFIN:ZDB-PUB-081022-38
Molecular Function	GO:0035014	phosphatidylinositol 3-kinase regulator activity	Rara	IMP		Rat	PMID:19531492|RGD:8553301
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15788	Human	PMID:16456540
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9Y6Q9	Human	PMID:16456540
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O75376	Human	PMID:16606617
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P59598	Human	PMID:16606617
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15788	Human	PMID:16606617
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:16769902
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P51946	Human	PMID:16769902
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O14497	Human	PMID:17363140
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q6STE5-1	Human	PMID:17363140
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q6STE5-2	Human	PMID:17363140
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15910	Human	PMID:17560333
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48552	Human	PMID:17641689
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15648	Human	PMID:17641689
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15788	Human	PMID:17641689
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q71SY5	Human	PMID:17641689
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q16236	Human	PMID:18048326
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:19345331
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q2M1K9	Human	PMID:19345331
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P61959	Human	PMID:19850744
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:19917671
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q96EB6	Human	PMID:19934264
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P03372	Human	PMID:20080953
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q91XC0	Human	PMID:20133701
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:20211142
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:20211142
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O75376	Human	PMID:20543827
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15788	Human	PMID:20543827
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9Y618	Human	PMID:20543827
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:21478865
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15648	Human	PMID:21478865
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15788	Human	PMID:21478865
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O75376	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P50148	Human	PMID:22056876
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O43707-1	Human	PMID:22351778
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9UPP1-2	Human	PMID:23518351
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P63165	Human	PMID:24819975
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9UKP3	Human	PMID:25036637
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:25241761
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O75376	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P19793	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P78527	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15648	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9Y618	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9Y6Q9	Human	PMID:25303530
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48552	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q8WW24	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702-3	Human	PMID:26871637
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q8WW24	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O15296	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:O95273	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P13056-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P28702	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P37231	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:P48443	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15699	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q96EZ8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q96RK4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q9H8W4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARA	IPI	UniProtKB:Q15648	Human	PMID:9653119
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q8VCB2	Mouse	MGI:MGI:5297783|PMID:17641689
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q16236	Mouse	MGI:MGI:6212886|PMID:28777872
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q8CBD1	Mouse	MGI:MGI:3687657|PMID:10531331
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q60591	Mouse	MGI:MGI:4411947|PMID:19752193
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q8C050	Mouse	MGI:MGI:3830444|PMID:19078967
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q925J9	Mouse	MGI:MGI:5297786|PMID:16723356
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:Q64127	Mouse	MGI:MGI:84614|PMID:8978696
Molecular Function	GO:0005515	protein binding	Rara	IPI	PR:Q9Z0Z7	Mouse	PMID:12101409
Molecular Function	GO:0005515	protein binding	Rara	IPI	PR:Q9JHR9	Mouse	PMID:10860982
Molecular Function	GO:0005515	protein binding	Rara	IPI	UniProtKB:P61959	Rat	PMID:19850744|RGD:8553529
Molecular Function	GO:0019904	protein domain specific binding	RARA	IPI	UniProtKB:O75528	Human	PMID:20413580
Molecular Function	GO:0051018	protein kinase A binding	RARA	IDA		Human	PMID:20215566
Molecular Function	GO:0043422	protein kinase B binding	RARA	IPI	UniProtKB:P31749	Human	PMID:16417524
Molecular Function	GO:0001972	retinoic acid binding	RARA	IDA		Human	PMID:2825025
Molecular Function	GO:0044323	retinoic acid-responsive element binding	RARA	IDA		Human	PMID:19917671
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	RARA	IDA		Human	PMID:20080953
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	RARA	IDA		Human	PMID:21131358
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	RARA	IMP		Human	PMID:28122350
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	rarab	IDA		Zfish	PMID:31091225
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	rarab	IMP		Zfish	PMID:31091225
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	RARA	IDA		Human	PMID:19917671
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Rara	IDA		Mouse	PMID:23613978
Molecular Function	GO:0043565	sequence-specific DNA binding	Rara	IGI	MGI:MGI:98214	Mouse	PMID:7823919
Molecular Function	GO:0043565	sequence-specific DNA binding	Rara	IGI	MGI:MGI:98216	Mouse	PMID:7823919
Molecular Function	GO:0043565	sequence-specific DNA binding	Rara	IDA		Mouse	PMID:17928865
Molecular Function	GO:0043565	sequence-specific DNA binding	Rara	IGI	MGI:MGI:98215	Mouse	PMID:7823919
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	RARA	IDA		Human	PMID:28473536
Molecular Function	GO:0005102	signaling receptor binding	RARA	IDA		Human	PMID:19628791
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Rara	IMP		Mouse	MGI:MGI:4411947|PMID:19752193
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Rara	IDA		Mouse	PMID:25209250
Molecular Function	GO:0001223	transcription coactivator binding	RARA	IPI	UniProtKB:Q71SY5	Human	PMID:17641689
Molecular Function	GO:0001223	transcription coactivator binding	Rara	IPI	UniProtKB:Q71SY5	Mouse	MGI:MGI:5297783|PMID:17641689
Cellular Component	GO:0015629	actin cytoskeleton	RARA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000785	chromatin	RARA	IDA		Human	PMID:17363140
Cellular Component	GO:0000785	chromatin	RARA	IDA		Human	PMID:21131358
Cellular Component	GO:0005737	cytoplasm	RARA	IDA		Human	PMID:19850744
Cellular Component	GO:0005737	cytoplasm	Rara	IDA		Mouse	PMID:12079996
Cellular Component	GO:0005737	cytoplasm	Rara	IDA		Rat	PMID:19332432|RGD:2314251
Cellular Component	GO:0005829	cytosol	RARA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0030425	dendrite	Rara	IDA		Rat	PMID:19073915|RGD:2314253
Cellular Component	GO:0043005	neuron projection	Rara	IDA		Rat	PMID:18957222|RGD:2314254
Cellular Component	GO:0005730	nucleolus	RARA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	RARA	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RARA	IDA		Human	PMID:18845237
Cellular Component	GO:0005634	nucleus	RARA	IDA		Human	PMID:19917671
Cellular Component	GO:0005634	nucleus	RARA	IDA		Human	PMID:20080953
Cellular Component	GO:0005634	nucleus	Rara	IDA		Mouse	MGI:MGI:4411947|PMID:19752193
Cellular Component	GO:0005634	nucleus	Rara	IDA		Mouse	PMID:12079996
Cellular Component	GO:0005634	nucleus	Rara	IDA		Rat	PMID:7581005|RGD:6771324
Cellular Component	GO:0005634	nucleus	Rara	IDA		Rat	PMID:9492059|RGD:633833
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Rara	IDA		Rat	PMID:12193579|RGD:625676
Cellular Component	GO:0005886	plasma membrane	RARA	IDA		Human	PMID:2825025
Cellular Component	GO:0032991	protein-containing complex	RARA	IDA		Human	PMID:19917671
Cellular Component	GO:0032991	protein-containing complex	RARA	IDA		Human	PMID:20080953
Cellular Component	GO:0090575	RNA polymerase II transcription regulator complex	RARA	IDA		Human	PMID:1310351
Cellular Component	GO:0005667	transcription regulator complex	RARA	IPI		Human	PMID:10698945
Cellular Component	GO:0005667	transcription regulator complex	RARA	IPI		Human	PMID:20543827
Cellular Component	GO:0005667	transcription regulator complex	RARA	IPI		Human	PMID:21152046
Cellular Component	GO:0005667	transcription regulator complex	RARA	IPI		Human	PMID:9430642
Cellular Component	GO:0005667	transcription regulator complex	Rara	IPI		Mouse	MGI:MGI:6827207|PMID:21152046
Cellular Component	GO:0005667	transcription regulator complex	Rara	EXP		Mouse	MGI:MGI:6869964|PMID:10882070
Biological Process	GO:0043277	apoptotic cell clearance	RARA	IMP		Human	PMID:19628791
Biological Process	GO:0060348	bone development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:9376317
Biological Process	GO:0060348	bone development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0071391	cellular response to estrogen stimulus	RARA	IDA		Human	PMID:20080953
Biological Process	GO:0071222	cellular response to lipopolysaccharide	Rara	IDA		Mouse	MGI:MGI:4411947|PMID:19752193
Biological Process	GO:0071300	cellular response to retinoic acid	RARA	IMP		Human	PMID:28122350
Biological Process	GO:0060591	chondroblast differentiation	Rara	IMP		Mouse	PMID:10684250
Biological Process	GO:0031076	embryonic camera-type eye development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0060324	face development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0007565	female pregnancy	Rara	IEP		Rat	PMID:18342837|RGD:2301676
Biological Process	GO:0007281	germ cell development	Rara	IMP		Mouse	MGI:MGI:3578614|PMID:15901285
Biological Process	GO:0002068	glandular epithelial cell development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0003417	growth plate cartilage development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:19389355
Biological Process	GO:0007507	heart development	rarab	IMP	ZFIN:ZDB-MRPHLNO-060315-5,ZFIN:ZDB-MRPHLNO-131018-1	Zfish	PMID:23990796
Biological Process	GO:0007507	heart development	rarab	IGI	ZFIN:ZDB-MRPHLNO-090908-4,ZFIN:ZDB-MRPHLNO-131018-1	Zfish	PMID:23990796
Biological Process	GO:0007507	heart development	rarab	IMP	ZFIN:ZDB-MRPHLNO-131018-1	Zfish	PMID:23990796
Biological Process	GO:0007507	heart development	rarab	IGI	ZFIN:ZDB-MRPHLNO-131002-1,ZFIN:ZDB-MRPHLNO-131002-2,ZFIN:ZDB-MRPHLNO-131018-1	Zfish	PMID:23990796
Biological Process	GO:0021575	hindbrain morphogenesis	raraa	IDA		Zfish	PMID:18929555|ZFIN:ZDB-PUB-081022-38
Biological Process	GO:0021766	hippocampus development	Rara	IEP		Rat	PMID:18619947|RGD:8693612
Biological Process	GO:0060173	limb development	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0001889	liver development	Rara	IEP		Rat	PMID:15388488|RGD:2314298
Biological Process	GO:0001889	liver development	raraa	IMP	ZFIN:ZDB-MRPHLNO-060315-3	Zfish	PMID:22982668
Biological Process	GO:0001889	liver development	rarab	IMP	ZFIN:ZDB-MRPHLNO-060315-5	Zfish	PMID:22982668
Biological Process	GO:0008584	male gonad development	Rara	IDA		Rat	PMID:14613895|RGD:2314299
Biological Process	GO:0030917	midbrain-hindbrain boundary development	rarab	IGI	ZFIN:ZDB-MRPHLNO-131002-1,ZFIN:ZDB-MRPHLNO-131002-2,ZFIN:ZDB-MRPHLNO-131018-1	Zfish	PMID:23990796
Biological Process	GO:0042789	mRNA transcription by RNA polymerase II	RARA	IDA		Human	PMID:1310351
Biological Process	GO:0035264	multicellular organism growth	Rara	IGI	MGI:MGI:97858	Mouse	PMID:19389355
Biological Process	GO:0061037	negative regulation of cartilage development	Rara	IMP		Mouse	PMID:10684250
Biological Process	GO:0045596	negative regulation of cell differentiation	Rara	IMP		Mouse	PMID:10684250
Biological Process	GO:0008285	negative regulation of cell population proliferation	Rara	IDA		Rat	PMID:12704731|RGD:2314301
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	RARA	IDA		Human	PMID:20080953
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Rara	IDA		Mouse	PMID:11641275
Biological Process	GO:0010629	negative regulation of gene expression	Rara	IGI	MGI:MGI:109275	Mouse	PMID:18026104
Biological Process	GO:0030853	negative regulation of granulocyte differentiation	RARA	IDA		Human	PMID:19917671
Biological Process	GO:1902894	negative regulation of miRNA transcription	RARA	IMP		Human	PMID:28122350
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:1349717	Mouse	PMID:7566114
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rara	IDA		Mouse	PMID:8152920
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	rarab	IDA		Zfish	PMID:31091225
Biological Process	GO:0017148	negative regulation of translation	Rara	IDA		Rat	PMID:19073915|RGD:2314253
Biological Process	GO:0032720	negative regulation of tumor necrosis factor production	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0032689	negative regulation of type II interferon production	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0001843	neural tube closure	Rara	IGI	MGI:MGI:97858	Mouse	PMID:7607067
Biological Process	GO:0033339	pectoral fin development	rarab	IDA		Zfish	PMID:18929555|ZFIN:ZDB-PUB-081022-38
Biological Process	GO:0033339	pectoral fin development	rarab	IMP	ZFIN:ZDB-MRPHLNO-060315-5	Zfish	PMID:21787766
Biological Process	GO:0051099	positive regulation of binding	RARA	IMP		Human	PMID:20080953
Biological Process	GO:0045787	positive regulation of cell cycle	RARA	IMP		Human	PMID:20080953
Biological Process	GO:0008284	positive regulation of cell population proliferation	RARA	IMP		Human	PMID:20080953
Biological Process	GO:0008284	positive regulation of cell population proliferation	Rara	IGI	MGI:MGI:109275	Mouse	PMID:18026104
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RARA	IDA		Human	PMID:18845237
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RARA	IMP		Human	PMID:19628791
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RARA	IDA		Human	PMID:19850744
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RARA	IDA		Human	PMID:20080953
Biological Process	GO:0070374	positive regulation of ERK1 and ERK2 cascade	Rara	IMP		Rat	PMID:19531492|RGD:8553301
Biological Process	GO:0010628	positive regulation of gene expression	Rara	IMP		Mouse	MGI:MGI:4411947|PMID:19752193
Biological Process	GO:0032736	positive regulation of interleukin-13 production	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0032753	positive regulation of interleukin-4 production	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0032754	positive regulation of interleukin-5 production	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0045666	positive regulation of neuron differentiation	Rara	IDA		Rat	PMID:19100254|RGD:2314252
Biological Process	GO:0014068	positive regulation of phosphatidylinositol 3-kinase signaling	Rara	IMP		Rat	PMID:19531492|RGD:8553301
Biological Process	GO:0051897	positive regulation of protein kinase B signaling	Rara	IMP		Rat	PMID:19531492|RGD:8553301
Biological Process	GO:0045630	positive regulation of T-helper 2 cell differentiation	RARA	IDA		Human	PMID:18416830
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RARA	IDA		Human	PMID:19850744
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RARA	IDA		Human	PMID:19917671
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RARA	IMP		Human	PMID:20080953
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RARA	IDA		Human	PMID:21131358
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	RARA	IDA		Human	PMID:9430642
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:98216	Mouse	PMID:7823919
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:106918	Mouse	PMID:15766748
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:88071	Mouse	PMID:15766748
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IDA		Mouse	PMID:23613978
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:98214	Mouse	PMID:7823919
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rara	IGI	MGI:MGI:98215	Mouse	PMID:7823919
Biological Process	GO:0030850	prostate gland development	Rara	IEP		Rat	PMID:12193579|RGD:625676
Biological Process	GO:0006468	protein phosphorylation	RARA	IMP		Human	PMID:16456540
Biological Process	GO:0042981	regulation of apoptotic process	Rara	IDA		Rat	PMID:12186877|RGD:633831
Biological Process	GO:0006355	regulation of DNA-templated transcription	Rara	IDA		Mouse	PMID:12101409
Biological Process	GO:0006355	regulation of DNA-templated transcription	Rara	IDA		Mouse	PMID:15322135
Biological Process	GO:0006355	regulation of DNA-templated transcription	Rara	IDA		Mouse	PMID:12079996
Biological Process	GO:0030852	regulation of granulocyte differentiation	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:11222375
Biological Process	GO:1901532	regulation of hematopoietic progenitor cell differentiation	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:11222375
Biological Process	GO:0031641	regulation of myelination	Rara	IDA		Rat	PMID:20648638|RGD:6771320
Biological Process	GO:0048167	regulation of synaptic plasticity	Rara	IDA		Rat	PMID:18957222|RGD:2314254
Biological Process	GO:0034097	response to cytokine	Rara	IEP		Rat	PMID:17078027|RGD:2314290
Biological Process	GO:0032355	response to estradiol	Rara	IEP		Rat	PMID:12193579|RGD:625676
Biological Process	GO:0045471	response to ethanol	Rara	IDA		Rat	PMID:12954654|RGD:2314300
Biological Process	GO:0032526	response to retinoic acid	RARA	IMP		Human	PMID:17538076
Biological Process	GO:0032526	response to retinoic acid	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:11222375
Biological Process	GO:0032526	response to retinoic acid	raraa	IDA		Zfish	PMID:18929555|ZFIN:ZDB-PUB-081022-38
Biological Process	GO:0033189	response to vitamin A	Rara	IEP		Rat	PMID:18384703|RGD:2301891
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	RARA	IMP		Human	PMID:17538076
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	RARA	IDA		Human	PMID:19917671
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	RARA	IDA		Human	PMID:2825025
Biological Process	GO:0003139	secondary heart field specification	rarab	IMP	ZFIN:ZDB-GENO-201105-9	Zfish	PMID:31091225
Biological Process	GO:0060010	Sertoli cell fate commitment	Rara	IMP		Mouse	MGI:MGI:5284770|PMID:17905941
Biological Process	GO:0060534	trachea cartilage development	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:9376317
Biological Process	GO:0001657	ureteric bud development	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:12195422
Biological Process	GO:0055012	ventricular cardiac muscle cell differentiation	Rara	IMP	MGI:MGI:1857622	Mouse	PMID:9428411

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern