Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Rarg

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes RARG
- Mouse genes Rarg
- Rat genes Rarg
- Zfish genes rarga,rargb
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rarg

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Rarg	IDA		Mouse	PMID:15327771
Molecular Function	GO:0003677	DNA binding	Rarg	IDA		Mouse	MGI:MGI:3799604\|PMID:18439490
Molecular Function	GO:0003677	DNA binding	rarga	IDA		Zfish	PMID:7565671\|ZFIN:ZDB-PUB-961014-511
Molecular Function	GO:0003700	DNA-binding transcription factor activity	Rarg	IDA		Mouse	MGI:MGI:3799604\|PMID:18439490
Molecular Function	GO:0004879	nuclear receptor activity	Rarg	IMP		Rat	PMID:11072095\|RGD:1300463
Molecular Function	GO:0046965	nuclear retinoid X receptor binding	Rarg	IMP		Mouse	MGI:MGI:3799604\|PMID:18439490
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P17096	Human	PMID:10428834
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:O60504-2	Human	PMID:15734736
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:Q9Y6Q9	Human	PMID:16456540
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:O75528	Human	PMID:20413580
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P28702	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P13349	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P28702	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P31321	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:P48443	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RARG	IPI	UniProtKB:Q96RK4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rarg	IPI	UniProtKB:Q91XC0	Mouse	MGI:MGI:5919154\|PMID:20133701
Molecular Function	GO:0005515	protein binding	Rarg	IPI	PR:Q9WU56	Mouse	PMID:15327771
Molecular Function	GO:0005515	protein binding	Rarg	IPI	MGI:MGI:1100874	Mouse	PMID:19389355
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	RARG	IDA		Human	PMID:28473536
Cellular Component	GO:0000785	chromatin	RARG	IDA		Human	PMID:21131358
Cellular Component	GO:0005654	nucleoplasm	RARG	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RARG	IDA		Human	PMID:18845237
Cellular Component	GO:0005634	nucleus	Rarg	IDA		Mouse	PMID:15327771
Cellular Component	GO:0005667	transcription regulator complex	Rarg	IDA		Mouse	MGI:MGI:3799604\|PMID:18439490
Biological Process	GO:0009952	anterior/posterior pattern specification	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:11784046
Biological Process	GO:0009952	anterior/posterior pattern specification	Rarg	IGI	MGI:MGI:88360	Mouse	PMID:11784046
Biological Process	GO:0009952	anterior/posterior pattern specification	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0006915	apoptotic process	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:16207763
Biological Process	GO:0060348	bone development	Rarg	IMP		Mouse	MGI:MGI:3848572\|PMID:19389355
Biological Process	GO:0060348	bone development	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:7607067
Biological Process	GO:0060348	bone development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0060349	bone morphogenesis	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0060349	bone morphogenesis	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:11784046
Biological Process	GO:0060349	bone morphogenesis	Rarg	IGI	MGI:MGI:88360	Mouse	PMID:11784046
Biological Process	GO:0008283	cell population proliferation	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	Rarg	IEP		Mouse	PMID:20439489
Biological Process	GO:0071300	cellular response to retinoic acid	Rarg	IEP		Rat	PMID:11072095\|RGD:1300463
Biological Process	GO:0002063	chondrocyte development	Rarg	IMP		Mouse	MGI:MGI:3848572\|PMID:19389355
Biological Process	GO:0071907	determination of digestive tract left/right asymmetry	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0061371	determination of heart left/right asymmetry	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0003140	determination of left/right asymmetry in lateral mesoderm	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0071910	determination of liver left/right asymmetry	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0035469	determination of pancreatic left/right asymmetry	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0031076	embryonic camera-type eye development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0048048	embryonic eye morphogenesis	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:16207763
Biological Process	GO:0035116	embryonic hindlimb morphogenesis	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:0060429	epithelium development	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0060324	face development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0048732	gland development	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0002068	glandular epithelial cell development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0002068	glandular epithelial cell development	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:7607067
Biological Process	GO:0003430	growth plate cartilage chondrocyte growth	Rarg	IMP		Mouse	MGI:MGI:3848572\|PMID:19389355
Biological Process	GO:0003417	growth plate cartilage development	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:19389355
Biological Process	GO:0003417	growth plate cartilage development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:19389355
Biological Process	GO:0070384	Harderian gland development	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0035622	intrahepatic bile duct development	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0060173	limb development	Rarg	IMP		Mouse	MGI:MGI:3848572\|PMID:19389355
Biological Process	GO:0060173	limb development	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0001889	liver development	rarga	IMP	ZFIN:ZDB-MRPHLNO-060315-4	Zfish	PMID:22982668
Biological Process	GO:0035264	multicellular organism growth	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:19389355
Biological Process	GO:0035264	multicellular organism growth	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:19389355
Biological Process	GO:0030514	negative regulation of BMP signaling pathway	rargb	IMP	ZFIN:ZDB-MRPHLNO-090825-4	Zfish	PMID:22982668
Biological Process	GO:0061037	negative regulation of cartilage development	Rarg	IMP		Mouse	PMID:10684250
Biological Process	GO:0045596	negative regulation of cell differentiation	Rarg	IMP		Mouse	PMID:10684250
Biological Process	GO:0032331	negative regulation of chondrocyte differentiation	Rarg	IMP		Mouse	PMID:10684250
Biological Process	GO:2000647	negative regulation of stem cell proliferation	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rarg	IDA		Mouse	PMID:8152920
Biological Process	GO:0001843	neural tube closure	Rarg	IGI	MGI:MGI:97856	Mouse	PMID:7607067
Biological Process	GO:0060037	pharyngeal system development	rarga	IDA		Zfish	PMID:18929555\|ZFIN:ZDB-PUB-081022-38
Biological Process	GO:0043065	positive regulation of apoptotic process	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:16207763
Biological Process	GO:0008284	positive regulation of cell population proliferation	Rarg	IMP		Rat	PMID:11072095\|RGD:1300463
Biological Process	GO:0010628	positive regulation of gene expression	Rarg	IDA		Mouse	PMID:19389355
Biological Process	GO:0043068	positive regulation of programmed cell death	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rarg	IDA		Mouse	PMID:15734736
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rarg	IDA		Mouse	PMID:15327771
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rarg	IGI	MGI:MGI:88071	Mouse	PMID:15766748
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Rarg	IGI	MGI:MGI:106918	Mouse	PMID:15766748
Biological Process	GO:0012501	programmed cell death	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:0060740	prostate gland epithelium morphogenesis	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0010468	regulation of gene expression	Rarg	IGI	MGI:MGI:1100874	Mouse	PMID:19389355
Biological Process	GO:0031641	regulation of myelination	Rarg	IDA		Rat	PMID:20648638\|RGD:6771320
Biological Process	GO:0045637	regulation of myeloid cell differentiation	Rarg	IGI	MGI:MGI:1339755	Mouse	PMID:23136256
Biological Process	GO:0048608	reproductive structure development	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0032526	response to retinoic acid	RARG	IDA		Human	PMID:17943189
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	RARG	IDA		Human	PMID:17943189
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	Rarg	IMP		Rat	PMID:11072095\|RGD:1300463
Biological Process	GO:0072089	stem cell proliferation	Rarg	IGI	MGI:MGI:97857	Mouse	PMID:10075839
Biological Process	GO:0060534	trachea cartilage development	Rarg	IMP	MGI:MGI:1931079	Mouse	PMID:8388780

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.