Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBM39
  • Mouse genes Rbm39
  • Rat genes Rbm39
  • Zfish genes rbm39a,rbm39b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbm39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q96IZ7	Human	PMID:15798186
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q15365	Human	PMID:17389360
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O00422	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P78362	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q8TBK6	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P49760	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P78362	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q96SB4	Human	PMID:23602568
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:A0A024RA76	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O00422	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O00560	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O75400-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P49760	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P59991	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P78362	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q05519	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q13427	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q15427	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q66PJ3-3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q6ZUT1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q6ZUT1-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q7Z7F0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q8IXK0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q8N9Q2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q8TBK6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q96MA6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q9NVV9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q16531,UniProtKB:Q66K64	Human	PMID:28437394
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:A7MD48	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O00422	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P49760	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P67870	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P68400	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P78424	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q05519-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q6ZUT1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q8WXA9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q92997	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q9C086	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q9NVV9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P78362	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:Q96SB4	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:O75400-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RBM39	IPI	UniProtKB:P13473-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Rbm39	IPI	PR:Q9DBU6	Mouse	PMID:15798186
Molecular Function	GO:0003723	RNA binding	RBM39	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RBM39	HDA		Human	PMID:22681889
Molecular Function	GO:0050733	RS domain binding	Rbm39	IPI	PR:Q9DBU6	Mouse	PMID:15798186
Cellular Component	GO:0034451	centriolar satellite	RBM39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0015630	microtubule cytoskeleton	RBM39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	RBM39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	RBM39	IMP		Human	PMID:28437394
Cellular Component	GO:0005654	nucleoplasm	RBM39	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	RBM39	IMP		Human	PMID:28437394
Biological Process	GO:0048024	regulation of mRNA splicing, via spliceosome	RBM39	IDA		Human	PMID:15694343
Biological Process	GO:0048024	regulation of mRNA splicing, via spliceosome	RBM39	IMP		Human	PMID:28302793
Biological Process	GO:0048024	regulation of mRNA splicing, via spliceosome	RBM39	IMP		Human	PMID:28437394

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern