Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBM42
  • Mouse genes Rbm42
  • Rat genes Rbm42
  • Zfish genes rbm42
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbm42

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:P61978	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:P61978	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:P25788	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:P61978	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:P86480	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM42	IPI	UniProtKB:Q6ZRY4	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	RBM42	HDA		Human	PMID:22658674
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	RBM42	IPI		Human	PMID:30975767
Biological Process	GO:0002088	lens development in camera-type eye	rbm42	IMP	ZFIN:ZDB-GENO-040809-1	Zfish	PMID:15716491
Biological Process	GO:0048025	negative regulation of mRNA splicing, via spliceosome	Rbm42	IMP		Mouse	PMID:23636947

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern