Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBM47
  • Mouse genes Rbm47
  • Rat genes Rbm47
  • Zfish genes rbm47
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbm47

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0019899	enzyme binding	RBM47	IPI	UniProtKB:P41238	Human	PMID:24916387
Molecular Function	GO:0140767	enzyme-substrate adaptor activity	RBM47	IDA		Human	PMID:24916387
Molecular Function	GO:0140767	enzyme-substrate adaptor activity	Rbm47	IDA		Mouse	MGI:MGI:5613094|PMID:24916387
Molecular Function	GO:0003730	mRNA 3'-UTR binding	RBM47	IDA		Human	PMID:34160127
Molecular Function	GO:0003730	mRNA 3'-UTR binding	Rbm47	IDA		Mouse	MGI:MGI:6859910|PMID:29844590
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q9NQ94	Human	PMID:24916387
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:B7ZLH0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:P32243-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:P57721-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q5SWW7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q66K41-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q6P1W5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q8N6W0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q9NWB1-5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q9NZ81	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM47	IPI	UniProtKB:Q9UQM7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rbm47	IPI	PR:P51908	Mouse	PMID:24916387
Molecular Function	GO:0005515	protein binding	Rbm47	IPI	PR:Q5YD48	Mouse	PMID:24916387
Molecular Function	GO:0003723	RNA binding	RBM47	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RBM47	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	RBM47	IDA		Human	PMID:24038582
Molecular Function	GO:0003723	RNA binding	RBM47	IDA		Human	PMID:24916387
Molecular Function	GO:0003723	RNA binding	Rbm47	IDA		Mouse	PMID:24916387
Cellular Component	GO:0030895	apolipoprotein B mRNA editing enzyme complex	RBM47	IDA		Human	PMID:24916387
Cellular Component	GO:0005737	cytoplasm	RBM47	IDA		Human	PMID:24916387
Cellular Component	GO:0005634	nucleus	RBM47	IDA		Human	PMID:24038582
Cellular Component	GO:0005634	nucleus	RBM47	IDA		Human	PMID:24916387
Cellular Component	GO:0005634	nucleus	Rbm47	IDA		Mouse	PMID:24916387
Biological Process	GO:0070935	3'-UTR-mediated mRNA stabilization	RBM47	IDA		Human	PMID:34160127
Biological Process	GO:0070935	3'-UTR-mediated mRNA stabilization	Rbm47	IDA		Mouse	MGI:MGI:6859910|PMID:29844590
Biological Process	GO:0016554	cytidine to uridine editing	RBM47	IDA		Human	PMID:24916387
Biological Process	GO:0016554	cytidine to uridine editing	RBM47	IDA		Human	PMID:30844405
Biological Process	GO:0016554	cytidine to uridine editing	Rbm47	IDA		Mouse	MGI:MGI:6331191|PMID:30309881
Biological Process	GO:0016554	cytidine to uridine editing	Rbm47	IDA		Mouse	MGI:MGI:7387172|PMID:30844405
Biological Process	GO:0016554	cytidine to uridine editing	Rbm47	IGI	MGI:MGI:103298	Mouse	PMID:24916387
Biological Process	GO:0060322	head development	rbm47	IMP	ZFIN:ZDB-MRPHLNO-140124-6	Zfish	PMID:24038582
Biological Process	GO:0060322	head development	rbm47	IMP	ZFIN:ZDB-MRPHLNO-140124-7	Zfish	PMID:24038582
Biological Process	GO:0002244	hematopoietic progenitor cell differentiation	Rbm47	IMP		Mouse	PMID:24029230
Biological Process	GO:0032733	positive regulation of interleukin-10 production	Rbm47	IMP		Mouse	MGI:MGI:6859910|PMID:29844590
Biological Process	GO:0060340	positive regulation of type I interferon-mediated signaling pathway	RBM47	IMP		Human	PMID:34160127
Biological Process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	RBM47	IDA		Human	PMID:31358901
Biological Process	GO:2000742	regulation of anterior head development	rbm47	IGI	ZFIN:ZDB-MRPHLNO-041217-12,ZFIN:ZDB-MRPHLNO-140124-6	Zfish	PMID:24038582

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern