Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RD3
  • Mouse genes Rd3
  • Rat genes Rd3
  • Zfish genes rd3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rd3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q02846	Human	PMID:21078983
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:A2ABF9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q14232	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q16774	Human	PMID:29515371
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q14232	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q14232	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q96HA8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q96KQ7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RD3	IPI	UniProtKB:Q9NPB3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rd3	IPI	UniProtKB:Q5SDA5	Mouse	MGI:MGI:4867355|PMID:21078983
Cellular Component	GO:0120199	cone photoreceptor outer segment	Rd3	IDA		Mouse	MGI:MGI:4867355|PMID:21078983
Cellular Component	GO:0005737	cytoplasm	RD3	IDA		Human	PMID:29030614
Cellular Component	GO:0005634	nucleus	RD3	IDA		Human	PMID:29030614
Cellular Component	GO:0005634	nucleus	Rd3	IDA		Mouse	MGI:MGI:3714414|PMID:17186464
Cellular Component	GO:0048471	perinuclear region of cytoplasm	RD3	IDA		Human	PMID:29030614
Cellular Component	GO:0001917	photoreceptor inner segment	Rd3	IDA		Mouse	MGI:MGI:6368063|PMID:29515371
Cellular Component	GO:0001917	photoreceptor inner segment	Rd3	IDA		Mouse	MGI:MGI:4867355|PMID:21078983
Cellular Component	GO:0001750	photoreceptor outer segment	Rd3	IDA		Mouse	MGI:MGI:6368063|PMID:29515371
Cellular Component	GO:0120200	rod photoreceptor outer segment	Rd3	IDA		Mouse	MGI:MGI:4867355|PMID:21078983
Biological Process	GO:0031283	negative regulation of guanylate cyclase activity	RD3	IMP		Human	PMID:21928830
Biological Process	GO:0031283	negative regulation of guanylate cyclase activity	RD3	IMP		Human	PMID:30559291
Biological Process	GO:0031283	negative regulation of guanylate cyclase activity	Rd3	IMP		Mouse	MGI:MGI:5810226|PMID:27471269
Biological Process	GO:0015031	protein transport	RD3	IMP		Human	PMID:21928830
Biological Process	GO:0060041	retina development in camera-type eye	Rd3	IMP		Mouse	MGI:MGI:52860|PMID:8486383
Biological Process	GO:0060041	retina development in camera-type eye	Rd3	IMP		Mouse	PMID:21052544
Biological Process	GO:0007601	visual perception	Rd3	IMP		Mouse	MGI:MGI:52860|PMID:8486383

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern