Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RERE
  • Mouse genes Rere
  • Rat genes Rere
  • Zfish genes rerea,rereb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rere

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:P54259	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:Q96KQ7	Human	PMID:18451879
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:Q14517	Human	PMID:19131340
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:P09234	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:P60329	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:Q3LI66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RERE	IPI	UniProtKB:Q96HB5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rere	IPI	UniProtKB:Q13547	Mouse	PMID:17150957
Molecular Function	GO:0005515	protein binding	Rere	IPI	PR:O09106	Mouse	PMID:14645126
Molecular Function	GO:0005515	protein binding	Rere	IPI	UniProtKB:Q09472	Mouse	PMID:17150957
Molecular Function	GO:0003713	transcription coactivator activity	Rere	IDA		Mouse	PMID:17150957
Molecular Function	GO:0003714	transcription corepressor activity	Rere	IMP		Mouse	PMID:17150957
Cellular Component	GO:0000118	histone deacetylase complex	Rere	IPI	PR:O09106	Mouse	PMID:14645126
Cellular Component	GO:0016604	nuclear body	RERE	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	RERE	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RERE	IDA		Human	PMID:10814707
Cellular Component	GO:0005634	nucleus	Rere	IDA		Mouse	PMID:24466353
Cellular Component	GO:0005634	nucleus	Rere	IDA		Mouse	PMID:17150957
Biological Process	GO:0048755	branching morphogenesis of a nerve	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0051216	cartilage development	rerea	IMP	ZFIN:ZDB-GENO-060718-1	Zfish	PMID:16754885
Biological Process	GO:0060536	cartilage morphogenesis	rerea	IMP	ZFIN:ZDB-GENO-980202-832	Zfish	PMID:25340762
Biological Process	GO:0021930	cerebellar granule cell precursor proliferation	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0021691	cerebellar Purkinje cell layer maturation	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0021549	cerebellum development	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0006338	chromatin remodeling	Rere	IPI	PR:O09106	Mouse	PMID:14645126
Biological Process	GO:0048813	dendrite morphogenesis	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0006351	DNA-templated transcription	Rere	IDA		Mouse	MGI:MGI:3708423|PMID:17150957
Biological Process	GO:0048839	inner ear development	rerea	IMP	ZFIN:ZDB-GENO-060718-1	Zfish	PMID:16754885
Biological Process	GO:0045879	negative regulation of smoothened signaling pathway	rerea	IMP	ZFIN:ZDB-MRPHLNO-060718-2	Zfish	PMID:24385484
Biological Process	GO:0060037	pharyngeal system development	rerea	IMP	ZFIN:ZDB-GENO-980202-832	Zfish	PMID:17576618
Biological Process	GO:0060037	pharyngeal system development	rerea	IGI	ZFIN:ZDB-GENO-071012-3	Zfish	PMID:17576618
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Rere	IDA		Mouse	MGI:MGI:3708423|PMID:17150957
Biological Process	GO:0021942	radial glia guided migration of Purkinje cell	Rere	IMP	MGI:MGI:3577419	Mouse	PMID:24466353
Biological Process	GO:0040036	regulation of fibroblast growth factor receptor signaling pathway	rerea	IGI	ZFIN:ZDB-GENO-071012-3	Zfish	PMID:17576618
Biological Process	GO:0040036	regulation of fibroblast growth factor receptor signaling pathway	rerea	IMP	ZFIN:ZDB-GENO-980202-832	Zfish	PMID:17576618
Biological Process	GO:0031063	regulation of histone deacetylation	rerea	IMP	ZFIN:ZDB-GENO-980202-832	Zfish	PMID:17576618

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern