Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RETREG1
  • Mouse genes Retreg1
  • Rat genes Retreg1
  • Zfish genes retreg1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Retreg1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0140506	endoplasmic reticulum-autophagosome adaptor activity	Retreg1	IMP		Mouse	PMID:34338405
Molecular Function	GO:0005515	protein binding	RETREG1	IPI	UniProtKB:O95166	Human	PMID:26040720
Molecular Function	GO:0005515	protein binding	RETREG1	IPI	UniProtKB:P60520	Human	PMID:26040720
Molecular Function	GO:0005515	protein binding	RETREG1	IPI	UniProtKB:Q9GZQ8	Human	PMID:26040720
Molecular Function	GO:0005515	protein binding	RETREG1	IPI	UniProtKB:Q9H0R8	Human	PMID:26040720
Molecular Function	GO:0005515	protein binding	RETREG1	IPI	UniProtKB:Q9H492	Human	PMID:26040720
Molecular Function	GO:0005515	protein binding	Retreg1	IPI	PR:Q9DCD6	Mouse	PMID:34338405
Molecular Function	GO:0005515	protein binding	Retreg1	IPI	PR:P35564	Mouse	PMID:34338405
Molecular Function	GO:0043621	protein self-association	RETREG1	IDA		Human	PMID:31930741
Cellular Component	GO:0005801	cis-Golgi network	Retreg1	IDA		Mouse	MGI:MGI:4410395|PMID:19838196
Cellular Component	GO:0005783	endoplasmic reticulum	RETREG1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	RETREG1	IDA		Human	PMID:35239449
Cellular Component	GO:0005783	endoplasmic reticulum	Retreg1	IDA		Mouse	PMID:34338405
Cellular Component	GO:0005789	endoplasmic reticulum membrane	RETREG1	IDA		Human	PMID:26040720
Cellular Component	GO:0016604	nuclear body	RETREG1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	RETREG1	IDA		Human	GO_REF:0000052
Biological Process	GO:0006914	autophagy	Retreg1	IDA		Mouse	PMID:31446166
Biological Process	GO:0030574	collagen catabolic process	Retreg1	IMP		Mouse	PMID:34338405
Biological Process	GO:0007029	endoplasmic reticulum organization	Retreg1	IMP		Mouse	PMID:34338405
Biological Process	GO:0000423	mitophagy	Retreg1	IDA		Mouse	PMID:31446166
Biological Process	GO:0043524	negative regulation of neuron apoptotic process	RETREG1	IMP		Human	PMID:26040720
Biological Process	GO:0043524	negative regulation of neuron apoptotic process	Retreg1	IMP		Mouse	MGI:MGI:5646045|PMID:26040720
Biological Process	GO:0061709	reticulophagy	RETREG1	IMP		Human	PMID:26040720
Biological Process	GO:0061709	reticulophagy	RETREG1	IMP		Human	PMID:31930741
Biological Process	GO:0061709	reticulophagy	Retreg1	IMP		Mouse	MGI:MGI:5646045|PMID:26040720
Biological Process	GO:0061709	reticulophagy	Retreg1	IMP		Mouse	PMID:34338405
Biological Process	GO:0061709	reticulophagy	Retreg1	IDA		Mouse	PMID:34338405
Biological Process	GO:0019233	sensory perception of pain	RETREG1	IMP		Human	PMID:19838196
Biological Process	GO:0050872	white fat cell differentiation	Retreg1	IDA		Mouse	PMID:31446166

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern