Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RETREG2
  • Mouse genes Retreg2
  • Rat genes Retreg2
  • Zfish genes retreg2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Retreg2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0140506	endoplasmic reticulum-autophagosome adaptor activity	Retreg2	IMP		Mouse	PMID:34338405
Molecular Function	GO:0005515	protein binding	RETREG2	IPI	UniProtKB:Q9GZQ8	Human	PMID:21900206
Molecular Function	GO:0005515	protein binding	RETREG2	IPI	UniProtKB:Q9GZQ8	Human	PMID:26040720
Cellular Component	GO:0005783	endoplasmic reticulum	Retreg2	IDA		Mouse	PMID:34338405
Biological Process	GO:0030574	collagen catabolic process	Retreg2	IMP		Mouse	PMID:34338405
Biological Process	GO:0007029	endoplasmic reticulum organization	Retreg2	IMP		Mouse	PMID:34338405
Biological Process	GO:0061709	reticulophagy	Retreg2	IMP		Mouse	PMID:34338405
Biological Process	GO:0061709	reticulophagy	Retreg2	IDA		Mouse	PMID:34338405

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern