Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RIDA
  • Mouse genes Rida
  • Rat genes Rida
  • Zfish genes rida
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rida

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0120242	2-iminobutanoate deaminase activity	RIDA	IDA		Human	PMID:22094463
Molecular Function	GO:0042802	identical protein binding	Rida	IPI	RGD:70940	Rat	PMID:8530410|RGD:9685552
Molecular Function	GO:0043167	ion binding	Rida	IDA		Rat	PMID:10089464|RGD:9685566
Molecular Function	GO:0036041	long-chain fatty acid binding	Rida	IDA		Rat	PMID:10101265|RGD:9685549
Molecular Function	GO:0003729	mRNA binding	RIDA	IDA		Human	PMID:30930054
Molecular Function	GO:0005515	protein binding	RIDA	IPI	UniProtKB:Q9Y5A9	Human	PMID:30930054
Molecular Function	GO:0005515	protein binding	RIDA	IPI	UniProtKB:Q8N9N5-2	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	RIDA	HDA		Human	PMID:22658674
Molecular Function	GO:0016892	RNA endonuclease activity, producing 3'-phosphomonoesters	Rida	IDA		Rat	PMID:10400702|RGD:9685547
Molecular Function	GO:0046914	transition metal ion binding	Rida	IDA		Rat	PMID:10089464|RGD:9685566
Cellular Component	GO:0005737	cytoplasm	RIDA	IDA		Human	PMID:8973653
Cellular Component	GO:0005829	cytosol	Rida	IDA		Rat	PMID:16843601|RGD:9685548
Cellular Component	GO:0070062	extracellular exosome	RIDA	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	RIDA	HDA		Human	PMID:20458337
Cellular Component	GO:0005759	mitochondrial matrix	Rida	IDA		Rat	PMID:11003673|RGD:12903244
Cellular Component	GO:0005739	mitochondrion	Rida	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005634	nucleus	RIDA	IDA		Human	PMID:8973653
Cellular Component	GO:0005634	nucleus	Rida	IDA		Rat	PMID:16843601|RGD:9685548
Cellular Component	GO:0005777	peroxisome	Rida	IDA		Rat	PMID:17416349|RGD:9685613
Biological Process	GO:0007420	brain development	Rida	IEP		Rat	PMID:11420142|RGD:9685564
Biological Process	GO:0070314	G1 to G0 transition	Rida	IEP		Rat	PMID:10961346|RGD:9685550
Biological Process	GO:0001822	kidney development	Rida	IEP		Rat	PMID:9609467|RGD:9685565
Biological Process	GO:0030324	lung development	Rida	IEP		Rat	PMID:12798936|RGD:9685563
Biological Process	GO:0006402	mRNA catabolic process	RIDA	IDA		Human	PMID:30930054
Biological Process	GO:0061157	mRNA destabilization	RIDA	IDA		Human	PMID:30930054
Biological Process	GO:0050680	negative regulation of epithelial cell proliferation	Rida	IMP		Rat	PMID:11577990|RGD:9685551
Biological Process	GO:0017148	negative regulation of translation	Rida	IDA		Rat	PMID:10400702|RGD:9685547
Biological Process	GO:1901565	organonitrogen compound catabolic process	RIDA	IDA		Human	PMID:22094463
Biological Process	GO:0033993	response to lipid	Rida	IEP		Rat	PMID:16843601|RGD:9685548
Biological Process	GO:1902074	response to salt	Rida	IEP		Rat	PMID:15257170|RGD:1599306

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern