Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RNF111
  • Mouse genes Rnf111
  • Rat genes Rnf111
  • Zfish genes rnf111
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rnf111

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:O15169	Human	PMID:16601693
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P51668	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P61077	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P63279	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:Q13404	Human	PMID:19549727
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P51668	Human	PMID:19690564
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P61077	Human	PMID:19690564
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P63279	Human	PMID:20936779
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P26371	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P68400	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:Q13404	Human	PMID:25260751
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:B2R8Y4	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P26371	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P51668	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P61077	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P63279	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P68400	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:Q5TA78	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:Q8WWZ3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P68400	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P26371	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RNF111	IPI	UniProtKB:P68400	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	Rnf111	IPI	UniProtKB:P12755	Mouse	MGI:MGI:4359363|PMID:17510063
Molecular Function	GO:0005515	protein binding	Rnf111	IPI	PR:000049801	Mouse	PMID:27292644
Molecular Function	GO:0005515	protein binding	Rnf111	IPI	UniprotkB:O35625	Mouse	PMID:16601693
Molecular Function	GO:0046332	SMAD binding	Rnf111	IPI	RGD:69314	Rat	PMID:17347560|RGD:2302562
Molecular Function	GO:0032184	SUMO polymer binding	RNF111	IDA		Human	PMID:23086935
Molecular Function	GO:0061630	ubiquitin protein ligase activity	RNF111	IMP		Human	PMID:16601693
Molecular Function	GO:0061630	ubiquitin protein ligase activity	Rnf111	IMP		Mouse	MGI:MGI:3628833|PMID:16601693
Cellular Component	GO:0005737	cytoplasm	Rnf111	IDA		Mouse	PMID:16601693
Cellular Component	GO:0005829	cytosol	RNF111	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	RNF111	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Rnf111	IDA		Mouse	PMID:11555636
Cellular Component	GO:0005634	nucleus	Rnf111	IDA		Mouse	PMID:16601693
Cellular Component	GO:0032991	protein-containing complex	Rnf111	IDA		Mouse	PMID:16601693
Biological Process	GO:0055113	epiboly involved in gastrulation with mouth forming second	rnf111	IMP	ZFIN:ZDB-MRPHLNO-151211-6	Zfish	PMID:25619648
Biological Process	GO:0007389	pattern specification process	Rnf111	IMP	MGI:MGI:2680166	Mouse	PMID:11298452
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	RNF111	IMP		Human	PMID:16601693
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Rnf111	IDA		Mouse	MGI:MGI:3628833|PMID:16601693
Biological Process	GO:0031398	positive regulation of protein ubiquitination	Rnf111	IMP		Mouse	PMID:16601693
Biological Process	GO:0031398	positive regulation of protein ubiquitination	Rnf111	IDA		Mouse	PMID:16601693
Biological Process	GO:0030511	positive regulation of transforming growth factor beta receptor signaling pathway	Rnf111	IDA		Mouse	PMID:16601693
Biological Process	GO:0030511	positive regulation of transforming growth factor beta receptor signaling pathway	Rnf111	IMP		Mouse	PMID:16601693
Biological Process	GO:0021501	prechordal plate formation	rnf111	IMP	ZFIN:ZDB-MRPHLNO-151211-6	Zfish	PMID:25619648
Biological Process	GO:0021501	prechordal plate formation	rnf111	IMP	ZFIN:ZDB-MRPHLNO-151211-5	Zfish	PMID:25619648
Biological Process	GO:0000209	protein polyubiquitination	Rnf111	IMP		Mouse	PMID:16601693
Biological Process	GO:0000209	protein polyubiquitination	Rnf111	IDA		Mouse	PMID:16601693
Biological Process	GO:0000209	protein polyubiquitination	Rnf111	IGI	MGI:MGI:1096327	Mouse	PMID:16601693
Biological Process	GO:0016567	protein ubiquitination	RNF111	IMP		Human	PMID:16601693
Biological Process	GO:0030579	ubiquitin-dependent SMAD protein catabolic process	Rnf111	IMP		Mouse	MGI:MGI:3628833|PMID:16601693
Biological Process	GO:0030579	ubiquitin-dependent SMAD protein catabolic process	Rnf111	IDA		Mouse	PMID:16601693

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern