Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RNF113A
  • Mouse genes Rnf113a2
  • Rat genes
  • Zfish genes rnf113a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rnf113a2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RNF113A	IPI	UniProtKB:O75643	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RNF113A	IPI	UniProtKB:Q13123	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RNF113A	IPI	UniProtKB:Q13435	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	RNF113A	IPI	UniProtKB:P61073	Human	PMID:28978524
Molecular Function	GO:0061630	ubiquitin protein ligase activity	RNF113A	IMP		Human	PMID:28978524
Cellular Component	GO:0005654	nucleoplasm	RNF113A	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	RNF113A	IDA		Human	PMID:29360106
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	RNF113A	IDA		Human	PMID:29360106
Biological Process	GO:0018276	isopeptide cross-linking via N6-glycyl-L-lysine	RNF113A	IMP		Human	PMID:28978524
Biological Process	GO:0000398	mRNA splicing, via spliceosome	RNF113A	IDA		Human	PMID:29360106
Biological Process	GO:0070100	negative regulation of chemokine-mediated signaling pathway	RNF113A	IMP		Human	PMID:28978524
Biological Process	GO:0016567	protein ubiquitination	RNF113A	IMP		Human	PMID:28978524

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern