Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RP1L1
  • Mouse genes Rp1l1
  • Rat genes Rp1l1
  • Zfish genes rp1l1a,rp1l1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rp1l1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0005930	axoneme	Rp1l1	IDA		Mouse	MGI:MGI:4353917|PMID:19657028
Cellular Component	GO:0032391	photoreceptor connecting cilium	Rp1l1	IDA		Mouse	MGI:MGI:4353917|PMID:19657028
Cellular Component	GO:0001750	photoreceptor outer segment	Rp1l1	IDA		Mouse	MGI:MGI:4353917|PMID:19657028
Biological Process	GO:0021549	cerebellum development	rp1l1a	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0021549	cerebellum development	rp1l1a	IMP	ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0060026	convergent extension	rp1l1a	IMP	ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0060026	convergent extension	rp1l1a	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0042461	photoreceptor cell development	Rp1l1	IMP		Mouse	MGI:MGI:4353917|PMID:19657028
Biological Process	GO:0045494	photoreceptor cell maintenance	RP1L1	IMP		Human	PMID:23281133
Biological Process	GO:0045494	photoreceptor cell maintenance	Rp1l1	IMP		Mouse	MGI:MGI:4353917|PMID:19657028
Biological Process	GO:0035845	photoreceptor cell outer segment organization	rp1l1a	IMP	ZFIN:ZDB-GENO-220307-1	Zfish	PMID:33007938
Biological Process	GO:0060041	retina development in camera-type eye	rp1l1a	IMP	ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556
Biological Process	GO:0060041	retina development in camera-type eye	rp1l1a	IGI	ZFIN:ZDB-MRPHLNO-101104-3,ZFIN:ZDB-MRPHLNO-151207-5	Zfish	PMID:27029556

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern