Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPL13A
  • Mouse genes Rpl13a
  • Rat genes Rpl13a
  • Zfish genes rpl13a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rpl13a

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Rpl13a	IDA		Mouse	PMID:23460747
Molecular Function	GO:0003723	RNA binding	RPL13A	HDA		Human	PMID:22658674
Molecular Function	GO:0003735	structural constituent of ribosome	RPL13A	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	RPL13A	IDA		Human	PMID:32669547
Molecular Function	GO:0003735	structural constituent of ribosome	Rpl13a	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0005737	cytoplasm	RPL13A	HDA		Human	PMID:16791210
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL13A	IPI		Human	PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL13A	HDA		Human	PMID:12962325
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	RPL13A	IDA		Human	PMID:32669547
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl13a	IPI		Mouse	MGI:MGI:6810796|PMID:25901680
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl13a	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022625	cytosolic large ribosomal subunit	Rpl13a	IDA		Rat	PMID:8119894|RGD:632924
Cellular Component	GO:0022626	cytosolic ribosome	RPL13A	IDA		Human	PMID:23636399
Cellular Component	GO:0005925	focal adhesion	RPL13A	HDA		Human	PMID:21423176
Cellular Component	GO:0097452	GAIT complex	RPL13A	IDA		Human	PMID:15479637
Cellular Component	GO:0097452	GAIT complex	RPL13A	IDA		Human	PMID:23071094
Cellular Component	GO:0016020	membrane	RPL13A	HDA		Human	PMID:19946888
Cellular Component	GO:0005730	nucleolus	RPL13A	HDA		Human	PMID:16791210
Cellular Component	GO:0005634	nucleus	RPL13A	HDA		Human	PMID:21630459
Cellular Component	GO:1990904	ribonucleoprotein complex	RPL13A	IDA		Human	PMID:15479637
Cellular Component	GO:1990904	ribonucleoprotein complex	RPL13A	IDA		Human	PMID:18809582
Cellular Component	GO:1990904	ribonucleoprotein complex	Rpl13a	IDA		Mouse	PMID:23460747
Cellular Component	GO:0005840	ribosome	Rpl13a	IDA		Rat	PMID:3730400|RGD:11036081
Cellular Component	GO:0045202	synapse	Rpl13a	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Rpl13a	IDA		Mouse	PMID:25211037
Biological Process	GO:0071320	cellular response to cAMP	Rpl13a	IEP		Rat	PMID:10483362|RGD:11036101
Biological Process	GO:0071480	cellular response to gamma radiation	Rpl13a	IEP		Rat	PMID:10483362|RGD:11036101
Biological Process	GO:0071346	cellular response to type II interferon	RPL13A	IDA		Human	PMID:15479637
Biological Process	GO:0071346	cellular response to type II interferon	Rpl13a	IDA		Mouse	MGI:MGI:5466658|PMID:23071094
Biological Process	GO:0071493	cellular response to UV-B	Rpl13a	IEP		Rat	PMID:10483362|RGD:11036101
Biological Process	GO:0042592	homeostatic process	Rpl13a	IMP	MGI:MGI:5502322	Mouse	PMID:23460747
Biological Process	GO:0060425	lung morphogenesis	Rpl13a	IMP	MGI:MGI:5502322	Mouse	PMID:23460747
Biological Process	GO:0048246	macrophage chemotaxis	Rpl13a	IMP	MGI:MGI:5502322	Mouse	PMID:23460747
Biological Process	GO:1901194	negative regulation of formation of translation preinitiation complex	RPL13A	IDA		Human	PMID:17218275
Biological Process	GO:0017148	negative regulation of translation	RPL13A	IDA		Human	PMID:14567916
Biological Process	GO:0017148	negative regulation of translation	RPL13A	IMP		Human	PMID:15479637
Biological Process	GO:0017148	negative regulation of translation	RPL13A	IDA		Human	PMID:23071094
Biological Process	GO:0017148	negative regulation of translation	Rpl13a	IDA		Mouse	MGI:MGI:5466658|PMID:23071094
Biological Process	GO:0032496	response to lipopolysaccharide	Rpl13a	IMP	MGI:MGI:5502322	Mouse	PMID:23460747

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern