Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPS13
  • Mouse genes Rps13
  • Rat genes Rps13,Rps13-ps10
  • Zfish genes rps13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rps13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990932	5.8S rRNA binding	Rps13	IDA		Rat	PMID:7251593|RGD:11040692
Molecular Function	GO:0048027	mRNA 5'-UTR binding	RPS13	IDA		Human	PMID:16213212
Molecular Function	GO:0003729	mRNA binding	RPS13	IDA		Human	PMID:17881366
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q53EL6	Human	PMID:12054647
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q99558	Human	PMID:14743216
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q5S007	Human	PMID:24725412
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:P19712:PRO_0000038050	Human	PMID:24965446
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q77YB1	Human	PMID:25854864
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q5S007	Human	PMID:31046837
Molecular Function	GO:0005515	protein binding	RPS13	IPI	UniProtKB:Q99558	Human	PMID:31980649
Molecular Function	GO:0003723	RNA binding	RPS13	HDA		Human	PMID:22681889
Molecular Function	GO:0003735	structural constituent of ribosome	RPS13	HDA		Human	PMID:15883184
Molecular Function	GO:0003735	structural constituent of ribosome	RPS13	IDA		Human	PMID:23636399
Molecular Function	GO:0003735	structural constituent of ribosome	Rps13	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022626	cytosolic ribosome	RPS13	IDA		Human	PMID:23636399
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS13	HDA		Human	PMID:15883184
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	RPS13	IDA		Human	PMID:8706699
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps13	IDA		Mouse	MGI:MGI:7432473|PMID:36517592
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps13	IDA		Rat	PMID:2328735|RGD:1599573
Cellular Component	GO:0022627	cytosolic small ribosomal subunit	Rps13	IDA		Rat	PMID:947902|RGD:2300010
Cellular Component	GO:0070062	extracellular exosome	RPS13	HDA		Human	PMID:20458337
Cellular Component	GO:0005925	focal adhesion	RPS13	HDA		Human	PMID:21423176
Cellular Component	GO:0016020	membrane	RPS13	HDA		Human	PMID:19946888
Cellular Component	GO:0005730	nucleolus	RPS13	IDA		Human	PMID:17881366
Cellular Component	GO:0005634	nucleus	RPS13	IDA		Human	PMID:17881366
Cellular Component	GO:0014069	postsynaptic density	RPS13	EXP		Human	PMID:21170055
Cellular Component	GO:0014069	postsynaptic density	RPS13	IDA		Human	PMID:21170055
Cellular Component	GO:0045202	synapse	Rps13-ps10	EXP		Rat	PMID:15020595|RGD:13702264
Cellular Component	GO:0045202	synapse	Rps13-ps10	IDA		Rat	PMID:15020595|RGD:13702264
Cellular Component	GO:0045202	synapse	Rps13	EXP		Rat	PMID:15020595|RGD:13702264
Cellular Component	GO:0045202	synapse	Rps13	IDA		Rat	PMID:15020595|RGD:13702264
Biological Process	GO:0033119	negative regulation of RNA splicing	RPS13	IDA		Human	PMID:17881366

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern